[BiO BB] Pipeline Tool

Martin Gollery marty.gollery at gmail.com
Tue Oct 6 17:20:58 EDT 2009

Hi Daniel,

There are commercial packages to build things like this- Pipeline Pilot,
ACGTuate and VIBE come to mind. Free tools include Taverna, BIP and BioGent.

It sounds, however, like you want something premade. Take a look at
Trace2dbEST, as this may do the trick. It is part of the BioLinux project,
which can easily be installed and has many other modules as well.


On Tue, Oct 6, 2009 at 6:32 AM, Daniel Xavier de Sousa <
danielucg at yahoo.com.br> wrote:

> Hi Everybody,
> I'm looking for a tool for run Genome Project. In other words, I want a
> system web to submit chromatogram, and process on it bases calling (PHRED),
> vector cleaning  (CROSS_MATCH), clustering (CAP3) and annotation (BLAST) -
> PIPELINE. And I would like to see all data on graphic interface.
> I have tried many others tools, as ESTWeb. But all them have different
> problems: the project has finished, there is not support, there is no lab
> using,...
> I have searched Google, Bioinformatics.ORG, ... But,I`m asking here because
> I would like to get some one that there are labs using it.
> No matter if the tool is comercial (have to pay for it). I really want
> resolve my problem of pipeline process.
> Can anyone, suggest one?
> Thanks,
> -Daniel Xavier de Sousa
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Martin Gollery
Senior Bioinformatics Scientist
Tahoe Informatics

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