[BiO BB] protein merge
rafik at ubuntu.com
Mon Mar 15 11:57:34 EDT 2010
I'm looking for a software that can merge two proteins with a shared domain
(given .pdb files).
With sequences it would be like this :
seq 1 : MSARIATRRRDKKARRKLQ*ELGATRLVVHRT*
seq 2 : *ELGATRLVVHRT*PRHIYAPNGSEVLVQVIAA
result : MSARIATRRRDKKARRKLQ*ELGATRLVVHRT*PRHIYAPNGSEVLVQVIAA
These two sequences have a common sequence ELGATRLVVHRT (end of the first
and beginning of the second). It's easy with sequences but I have to do it
with 3D structures. I have the 3D structures of both sequences 1 and 2.
More information about the BBB