[BiO BB] program for sequence length
pfern at igc.gulbenkian.pt
Fri May 7 03:56:55 EDT 2010
Try INFOSEQ (Gary Williams), a program available with the EMBOSS package
infoseq -sequence=your.fasta -only -length -auto
EMBOSS is installed in many places and has open source.
I agree, do not reinvent the wheel!
Centro Português de Bioinformática
Instituto Gulbenkian de Ciência
Quoting Pankaj Khurana <pkhurana08 at gmail.com>:
> Hi all,
> I have a few 1000 fasta files. I would like to get the list showing the
> sequence name and their respective lengths.
> Is there a program for this?
> I can write one but why reinvent the wheel.
> Thanking all in advance
> BBB mailing list
> BBB at bioinformatics.org
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