[BiO BB] Gene and upstream downstream sequence retrieval

Tirza Doniger tirza at biomodel.os.biu.ac.il
Tue Mar 22 05:11:51 EDT 2011

Hi Thimma,

You don't mention from which organism these genes come from?

In the  UCSC genome browser - choose "tables"- you can enter a list of genes
as long as the names are in a format that is recognized.

Choose output "sequences"-> "genomic"-> then you can specify which part of
the gene you want and how much upstream/downstream

Tirza Doniger, Ph.D.
Bioinformatics Unit
The Mina and Everard Faculty of Life Sciences
Bar Ilan University
Phone: +972 3 531 8124
 Life is like riding a bicycle. To keep your balance you must keep moving.
-----Albert Einstein
On Sat, Mar 19, 2011 at 11:25 AM, manju la <manjulathimma at yahoo.com> wrote:

> Dear All,
> I have a set of 300 gene names (for ex LCK, CD247 etc). I wanted to extract
> sequences of these genes along with 15-20kbp both upstream and downstream
> of
> these genes. If you know any programmatic way of achieving this, that would
> be
> great.
> Regards
> Thimma
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