[BioBrew Users] : how to run mpiblast

kenix y justbeforeme at hotmail.com
Fri Jul 16 01:37:17 EDT 2004


Regarding
3) edit my /etc/profile

export BLASTPATH=/opt/BioBrew/NCBI/6.1.0/bin
export MPIBLASTCONFIG=/home/bigcpuguest/mpiblast.conf
export MPIRUN=/usr/bin/mpirun

This is the correct one, forgot to edit the mail just now, sorry.

I've move ecoli.nt to /home/bigcpuguest and chmod 777 it, but when I 
mpiformatdb, it always gives me this:

Moving fragments to /mnt/pvfs
mv: cannot stat '/home/bigcpuguest/ecoli.nt.nal': No such file or directory
Created and moved 3 fragments.

After I do that, there'll be a (null).nal in my /home/bigcpuguest.
Is there anything to do with my mpiblast not being able to run?

The output is still the same as my previous mail.

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