[BioBrew Users] Trouble running mpiBlast

Glen Otero gotero at linuxprophet.com
Sun Mar 14 19:14:33 EST 2004


Soumyadeep-

You're running BioBrew 1.0, correct?

Glen

On Mar 13, 2004, at 7:40 AM, Soumyadeep nandi wrote:

> --- Glen Otero <gotero at linuxprophet.com> wrote:
>>> The pvm we were using in production mode was
>>> HMMER-2.3.2 compiled with the intel compiler.
>>
>> What flags did you use to compile HMMER with the
>> Intel compiler? We'll
>> be offering the Intel compilers and tools in our
>> distro soon.
>
> We used the precompiled version from the hmmer site -
> here is the listing:
>
>  Intel GNU/Linux
>     Download: hmmer-2.3.2.bin.intel-linux.tar.gz
>     Or, as an RPM: hmmer-2.3.2-1static_pvm.i686.rpm
>     Dell 6450; 4xPIII/700/2; Red Hat Linux 7.2;
> --enable-threads --enable-lfs --enable-pvm; CC=icc
> CFLAGS="-O3 -axMKW -static"
>     the RPM spec file is available: hmmer-pvm.spec
>
> Soumyadeep
>
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>
Glen Otero, Ph.D.
Linux Prophet
619.917.1772




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