[BioBrew Users] Trouble running mpiBlast

[Glen Otero]

Soumyadeep-

No need to switch over to BioBrew 3.0 just yet. We should be able to 
send you new rpms for BLAST, lam-mpi, and vmi (if necessary) to take 
care of the problems on 1.0.

Glen

On Mar 15, 2004, at 9:45 AM, Soumyadeep nandi wrote:

> Hi Glen,
>
>> You're running BioBrew 1.0, correct?
>
> We are using BioBrew 1.0 and isos are downloaded from
> ftp://ftp.bay13.net/pub/BioBrew/.
> Moreover, you have released version 3.0, that is
> available in "Massachusetts, USA --
> http://bioinformatics.org/ftp/biobrew/", should we
> switch over to this latest version.
>
> Regards,
> Soumyadeep
>
> --- Glen Otero <gotero at linuxprophet.com> wrote:
>> Soumyadeep-
>>
>> You're running BioBrew 1.0, correct?
>>
>> Glen
>>
>> On Mar 13, 2004, at 7:40 AM, Soumyadeep nandi wrote:
>>
>>> --- Glen Otero <gotero at linuxprophet.com> wrote:
>>>>> The pvm we were using in production mode was
>>>>> HMMER-2.3.2 compiled with the intel compiler.
>>>>
>>>> What flags did you use to compile HMMER with the
>>>> Intel compiler? We'll
>>>> be offering the Intel compilers and tools in our
>>>> distro soon.
>>>
>>> We used the precompiled version from the hmmer
>> site -
>>> here is the listing:
>>>
>>>  Intel GNU/Linux
>>>     Download: hmmer-2.3.2.bin.intel-linux.tar.gz
>>>     Or, as an RPM:
>> hmmer-2.3.2-1static_pvm.i686.rpm
>>>     Dell 6450; 4xPIII/700/2; Red Hat Linux 7.2;
>>> --enable-threads --enable-lfs --enable-pvm; CC=icc
>>> CFLAGS="-O3 -axMKW -static"
>>>     the RPM spec file is available: hmmer-pvm.spec
>>>
>>> Soumyadeep
>>>
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>>
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>>>
>>>
>> Glen Otero, Ph.D.
>> Linux Prophet
>> 619.917.1772
>>
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>>
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>
>
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Glen Otero, Ph.D.
Linux Prophet
619.917.1772