[BioBrew Users] Trouble running mpiBlast

[Glen Otero]

Sharon-

We should have new rpms by Tuesday or Wednesday (California time) ; )

Glen

On Mar 15, 2004, at 4:53 PM, shalini sharon wrote:

>
> Hi, Glen
>
> Can we know by when u will be able to send urs the rpms?
>
> Thank U
>
> Rgs, sharon
>
>
>> From: Glen Otero <gotero at linuxprophet.com>
>> Reply-To: BioBrew-Users at bioinformatics.org
>> To: BioBrew-Users at bioinformatics.org
>> Subject: Re: [BioBrew Users] Trouble running mpiBlast
>> Date: Mon, 15 Mar 2004 12:19:01 -0800
>>
>> Soumyadeep-
>>
>> No need to switch over to BioBrew 3.0 just yet. We should be able to 
>> send you new rpms for BLAST, lam-mpi, and vmi (if necessary) to take 
>> care of the problems on 1.0.
>>
>> Glen
>>
>> On Mar 15, 2004, at 9:45 AM, Soumyadeep nandi wrote:
>>
>>> Hi Glen,
>>>
>>>> You're running BioBrew 1.0, correct?
>>>
>>> We are using BioBrew 1.0 and isos are downloaded from
>>> ftp://ftp.bay13.net/pub/BioBrew/.
>>> Moreover, you have released version 3.0, that is
>>> available in "Massachusetts, USA --
>>> http://bioinformatics.org/ftp/biobrew/", should we
>>> switch over to this latest version.
>>>
>>> Regards,
>>> Soumyadeep
>>>
>>> --- Glen Otero <gotero at linuxprophet.com> wrote:
>>>> Soumyadeep-
>>>>
>>>> You're running BioBrew 1.0, correct?
>>>>
>>>> Glen
>>>>
>>>> On Mar 13, 2004, at 7:40 AM, Soumyadeep nandi wrote:
>>>>
>>>>> --- Glen Otero <gotero at linuxprophet.com> wrote:
>>>>>>> The pvm we were using in production mode was
>>>>>>> HMMER-2.3.2 compiled with the intel compiler.
>>>>>>
>>>>>> What flags did you use to compile HMMER with the
>>>>>> Intel compiler? We'll
>>>>>> be offering the Intel compilers and tools in our
>>>>>> distro soon.
>>>>>
>>>>> We used the precompiled version from the hmmer
>>>> site -
>>>>> here is the listing:
>>>>>
>>>>>  Intel GNU/Linux
>>>>>     Download: hmmer-2.3.2.bin.intel-linux.tar.gz
>>>>>     Or, as an RPM:
>>>> hmmer-2.3.2-1static_pvm.i686.rpm
>>>>>     Dell 6450; 4xPIII/700/2; Red Hat Linux 7.2;
>>>>> --enable-threads --enable-lfs --enable-pvm; CC=icc
>>>>> CFLAGS="-O3 -axMKW -static"
>>>>>     the RPM spec file is available: hmmer-pvm.spec
>>>>>
>>>>> Soumyadeep
>>>>>
>>>>> __________________________________
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>>>>> _______________________________________________
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>>>>>
>>>>
>>> https://bioinformatics.org/mailman/listinfo/BioBrew-Users
>>>>>
>>>>>
>>>> Glen Otero, Ph.D.
>>>> Linux Prophet
>>>> 619.917.1772
>>>>
>>>> _______________________________________________
>>>> BioBrew-Users mailing list
>>>> BioBrew-Users at bioinformatics.org
>>>>
>>> https://bioinformatics.org/mailman/listinfo/BioBrew-Users
>>>
>>>
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>>>
>> Glen Otero, Ph.D.
>> Linux Prophet
>> 619.917.1772
>>
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>> BioBrew-Users mailing list
>> BioBrew-Users at bioinformatics.org
>> https://bioinformatics.org/mailman/listinfo/BioBrew-Users
>
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Glen Otero, Ph.D.
Linux Prophet
619.917.1772