[BioBrew Users] Trouble running mpiBlast

[shalini sharon]

Hi Glen,



Thanks for ur reply. Can u send us an email notifying us when the rpms are 
done?
Are we suppose to download the rpms from www.bioinformatics.org website?

We faced another error while running EMBOSS. Do u have any ideas
what this error means?

Error message:
================================================================================
pwd: /opt/BioBrew/EMBOSS/2.6.0/bin
[root at frontend-0 bin]./wossname
./wossname: error while loading shared libraries libnucleus.so.0: cannot 
open shared object file: No such file or direectory
================================================================================

The pointer seems to point to /usr/local/lib for the file, but the file are 
located at /opt/BioBrew/EMBOSS/2.6.0/lib. Is there any where to change the 
pointer?? And which file contain the pointer code?


Rgds
Sharon

>From: Glen Otero <gotero at linuxprophet.com>
>Reply-To: BioBrew-Users at bioinformatics.org
>To: BioBrew-Users at bioinformatics.org
>Subject: Re: [BioBrew Users] Trouble running mpiBlast
>Date: Mon, 15 Mar 2004 19:50:31 -0800
>
>Sharon-
>
>We should have new rpms by Tuesday or Wednesday (California time) ; )
>
>Glen
>
>On Mar 15, 2004, at 4:53 PM, shalini sharon wrote:
>
>>
>>Hi, Glen
>>
>>Can we know by when u will be able to send urs the rpms?
>>
>>Thank U
>>
>>Rgs, sharon
>>
>>
>>>From: Glen Otero <gotero at linuxprophet.com>
>>>Reply-To: BioBrew-Users at bioinformatics.org
>>>To: BioBrew-Users at bioinformatics.org
>>>Subject: Re: [BioBrew Users] Trouble running mpiBlast
>>>Date: Mon, 15 Mar 2004 12:19:01 -0800
>>>
>>>Soumyadeep-
>>>
>>>No need to switch over to BioBrew 3.0 just yet. We should be able to send 
>>>you new rpms for BLAST, lam-mpi, and vmi (if necessary) to take care of 
>>>the problems on 1.0.
>>>
>>>Glen
>>>
>>>On Mar 15, 2004, at 9:45 AM, Soumyadeep nandi wrote:
>>>
>>>>Hi Glen,
>>>>
>>>>>You're running BioBrew 1.0, correct?
>>>>
>>>>We are using BioBrew 1.0 and isos are downloaded from
>>>>ftp://ftp.bay13.net/pub/BioBrew/.
>>>>Moreover, you have released version 3.0, that is
>>>>available in "Massachusetts, USA --
>>>>http://bioinformatics.org/ftp/biobrew/", should we
>>>>switch over to this latest version.
>>>>
>>>>Regards,
>>>>Soumyadeep
>>>>
>>>>--- Glen Otero <gotero at linuxprophet.com> wrote:
>>>>>Soumyadeep-
>>>>>
>>>>>You're running BioBrew 1.0, correct?
>>>>>
>>>>>Glen
>>>>>
>>>>>On Mar 13, 2004, at 7:40 AM, Soumyadeep nandi wrote:
>>>>>
>>>>>>--- Glen Otero <gotero at linuxprophet.com> wrote:
>>>>>>>>The pvm we were using in production mode was
>>>>>>>>HMMER-2.3.2 compiled with the intel compiler.
>>>>>>>
>>>>>>>What flags did you use to compile HMMER with the
>>>>>>>Intel compiler? We'll
>>>>>>>be offering the Intel compilers and tools in our
>>>>>>>distro soon.
>>>>>>
>>>>>>We used the precompiled version from the hmmer
>>>>>site -
>>>>>>here is the listing:
>>>>>>
>>>>>>  Intel GNU/Linux
>>>>>>     Download: hmmer-2.3.2.bin.intel-linux.tar.gz
>>>>>>     Or, as an RPM:
>>>>>hmmer-2.3.2-1static_pvm.i686.rpm
>>>>>>     Dell 6450; 4xPIII/700/2; Red Hat Linux 7.2;
>>>>>>--enable-threads --enable-lfs --enable-pvm; CC=icc
>>>>>>CFLAGS="-O3 -axMKW -static"
>>>>>>     the RPM spec file is available: hmmer-pvm.spec
>>>>>>
>>>>>>Soumyadeep
>>>>>>
>>>>>>__________________________________
>>>>>>Do you Yahoo!?
>>>>>>Yahoo! Mail - More reliable, more storage, less
>>>>>spam
>>>>>>http://mail.yahoo.com
>>>>>>_______________________________________________
>>>>>>BioBrew-Users mailing list
>>>>>>BioBrew-Users at bioinformatics.org
>>>>>>
>>>>>
>>>>https://bioinformatics.org/mailman/listinfo/BioBrew-Users
>>>>>>
>>>>>>
>>>>>Glen Otero, Ph.D.
>>>>>Linux Prophet
>>>>>619.917.1772
>>>>>
>>>>>_______________________________________________
>>>>>BioBrew-Users mailing list
>>>>>BioBrew-Users at bioinformatics.org
>>>>>
>>>>https://bioinformatics.org/mailman/listinfo/BioBrew-Users
>>>>
>>>>
>>>>__________________________________
>>>>Do you Yahoo!?
>>>>Yahoo! Mail - More reliable, more storage, less spam
>>>>http://mail.yahoo.com
>>>>_______________________________________________
>>>>BioBrew-Users mailing list
>>>>BioBrew-Users at bioinformatics.org
>>>>https://bioinformatics.org/mailman/listinfo/BioBrew-Users
>>>>
>>>>
>>>Glen Otero, Ph.D.
>>>Linux Prophet
>>>619.917.1772
>>>
>>>_______________________________________________
>>>BioBrew-Users mailing list
>>>BioBrew-Users at bioinformatics.org
>>>https://bioinformatics.org/mailman/listinfo/BioBrew-Users
>>
>>_________________________________________________________________
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>>_______________________________________________
>>BioBrew-Users mailing list
>>BioBrew-Users at bioinformatics.org
>>https://bioinformatics.org/mailman/listinfo/BioBrew-Users
>>
>>
>Glen Otero, Ph.D.
>Linux Prophet
>619.917.1772
>
>_______________________________________________
>BioBrew-Users mailing list
>BioBrew-Users at bioinformatics.org
>https://bioinformatics.org/mailman/listinfo/BioBrew-Users

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