On Mar 15, 2004, at 10:34 PM, shalini sharon wrote: > Hi Glen, > > > > Thanks for ur reply. Can u send us an email notifying us when the rpms > are done? Absolutely. > Are we suppose to download the rpms from www.bioinformatics.org > website? That may be one way. But I may be able to email them to you as well. > > We faced another error while running EMBOSS. Do u have any ideas > what this error means? > > Error message: > ======================================================================= > ========= > pwd: /opt/BioBrew/EMBOSS/2.6.0/bin > [root at frontend-0 bin]./wossname > ./wossname: error while loading shared libraries libnucleus.so.0: > cannot open shared object file: No such file or direectory > ======================================================================= > ========= > > The pointer seems to point to /usr/local/lib for the file, but the > file are located at /opt/BioBrew/EMBOSS/2.6.0/lib. Is there any where > to change the pointer?? And which file contain the pointer code? Can you make a symbolic link that points to the proper library? Glen > > > Rgds > Sharon > >> From: Glen Otero <gotero at linuxprophet.com> >> Reply-To: BioBrew-Users at bioinformatics.org >> To: BioBrew-Users at bioinformatics.org >> Subject: Re: [BioBrew Users] Trouble running mpiBlast >> Date: Mon, 15 Mar 2004 19:50:31 -0800 >> >> Sharon- >> >> We should have new rpms by Tuesday or Wednesday (California time) ; ) >> >> Glen >> >> On Mar 15, 2004, at 4:53 PM, shalini sharon wrote: >> >>> >>> Hi, Glen >>> >>> Can we know by when u will be able to send urs the rpms? >>> >>> Thank U >>> >>> Rgs, sharon >>> >>> >>>> From: Glen Otero <gotero at linuxprophet.com> >>>> Reply-To: BioBrew-Users at bioinformatics.org >>>> To: BioBrew-Users at bioinformatics.org >>>> Subject: Re: [BioBrew Users] Trouble running mpiBlast >>>> Date: Mon, 15 Mar 2004 12:19:01 -0800 >>>> >>>> Soumyadeep- >>>> >>>> No need to switch over to BioBrew 3.0 just yet. We should be able >>>> to send you new rpms for BLAST, lam-mpi, and vmi (if necessary) to >>>> take care of the problems on 1.0. >>>> >>>> Glen >>>> >>>> On Mar 15, 2004, at 9:45 AM, Soumyadeep nandi wrote: >>>> >>>>> Hi Glen, >>>>> >>>>>> You're running BioBrew 1.0, correct? >>>>> >>>>> We are using BioBrew 1.0 and isos are downloaded from >>>>> ftp://ftp.bay13.net/pub/BioBrew/. >>>>> Moreover, you have released version 3.0, that is >>>>> available in "Massachusetts, USA -- >>>>> http://bioinformatics.org/ftp/biobrew/", should we >>>>> switch over to this latest version. >>>>> >>>>> Regards, >>>>> Soumyadeep >>>>> >>>>> --- Glen Otero <gotero at linuxprophet.com> wrote: >>>>>> Soumyadeep- >>>>>> >>>>>> You're running BioBrew 1.0, correct? >>>>>> >>>>>> Glen >>>>>> >>>>>> On Mar 13, 2004, at 7:40 AM, Soumyadeep nandi wrote: >>>>>> >>>>>>> --- Glen Otero <gotero at linuxprophet.com> wrote: >>>>>>>>> The pvm we were using in production mode was >>>>>>>>> HMMER-2.3.2 compiled with the intel compiler. >>>>>>>> >>>>>>>> What flags did you use to compile HMMER with the >>>>>>>> Intel compiler? We'll >>>>>>>> be offering the Intel compilers and tools in our >>>>>>>> distro soon. >>>>>>> >>>>>>> We used the precompiled version from the hmmer >>>>>> site - >>>>>>> here is the listing: >>>>>>> >>>>>>> Intel GNU/Linux >>>>>>> Download: hmmer-2.3.2.bin.intel-linux.tar.gz >>>>>>> Or, as an RPM: >>>>>> hmmer-2.3.2-1static_pvm.i686.rpm >>>>>>> Dell 6450; 4xPIII/700/2; Red Hat Linux 7.2; >>>>>>> --enable-threads --enable-lfs --enable-pvm; CC=icc >>>>>>> CFLAGS="-O3 -axMKW -static" >>>>>>> the RPM spec file is available: hmmer-pvm.spec >>>>>>> >>>>>>> Soumyadeep >>>>>>> >>>>>>> __________________________________ >>>>>>> Do you Yahoo!? >>>>>>> Yahoo! Mail - More reliable, more storage, less >>>>>> spam >>>>>>> http://mail.yahoo.com >>>>>>> _______________________________________________ >>>>>>> BioBrew-Users mailing list >>>>>>> BioBrew-Users at bioinformatics.org >>>>>>> >>>>>> >>>>> https://bioinformatics.org/mailman/listinfo/BioBrew-Users >>>>>>> >>>>>>> >>>>>> Glen Otero, Ph.D. >>>>>> Linux Prophet >>>>>> 619.917.1772 >>>>>> >>>>>> _______________________________________________ >>>>>> BioBrew-Users mailing list >>>>>> BioBrew-Users at bioinformatics.org >>>>>> >>>>> https://bioinformatics.org/mailman/listinfo/BioBrew-Users >>>>> >>>>> >>>>> __________________________________ >>>>> Do you Yahoo!? >>>>> Yahoo! Mail - More reliable, more storage, less spam >>>>> http://mail.yahoo.com >>>>> _______________________________________________ >>>>> BioBrew-Users mailing list >>>>> BioBrew-Users at bioinformatics.org >>>>> https://bioinformatics.org/mailman/listinfo/BioBrew-Users >>>>> >>>>> >>>> Glen Otero, Ph.D. >>>> Linux Prophet >>>> 619.917.1772 >>>> >>>> _______________________________________________ >>>> BioBrew-Users mailing list >>>> BioBrew-Users at bioinformatics.org >>>> https://bioinformatics.org/mailman/listinfo/BioBrew-Users >>> >>> _________________________________________________________________ >>> Keep track of Singapore & Malaysia stock prices. >>> http://www.msn.com.sg/money/ >>> >>> _______________________________________________ >>> BioBrew-Users mailing list >>> BioBrew-Users at bioinformatics.org >>> https://bioinformatics.org/mailman/listinfo/BioBrew-Users >>> >>> >> Glen Otero, Ph.D. >> Linux Prophet >> 619.917.1772 >> >> _______________________________________________ >> BioBrew-Users mailing list >> BioBrew-Users at bioinformatics.org >> https://bioinformatics.org/mailman/listinfo/BioBrew-Users > > _________________________________________________________________ > Download games, logos, wallpapers and lots more at MSN Mobile! > http://www.msn.com.sg/mobile/ > > _______________________________________________ > BioBrew-Users mailing list > BioBrew-Users at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/BioBrew-Users > > Glen Otero, Ph.D. Linux Prophet 619.917.1772