[BioBrew Users] EMBOSS

Glen Otero gotero at linuxprophet.com
Fri Mar 19 12:51:55 EST 2004


Khalil-

You need to set up your environment for using EMBOSS. In your  
~/.bashrc, write:

export LD_LIBRARY_PATH=/opt/BioBrew/EMBOSS/2.6.0/lib:$LD_LIBRARY_PATH

then either log out and log back in, or source your ~/.bashrc to export  
the variable in your shell

Let me know how that works for you.

Glen


On Mar 18, 2004, at 10:01 AM, Khalil El Mazouari wrote:

> Hi Glen,
> I am using the BioBrew-1.0. I used /opt/BioBrew/EMBOSS/2.6.0/bin/<any  
> emboss application>.
> Is it possible to upgrade EMBOSS to 2.8.0.  
> (http://www.biolinux.org/emboss.html). I tried to install it using  
> cluster-fork rpm -Uvh ... command, but it doesn't work.
> Thanks for your help.
> Khalil
>
> Glen Otero wrote:
>
>> Khalil-
>>
>> Which version of BioBrew are you using? Can you send the command line  
>> sequence of any of the jobs you're trying to run?
>>
>> Glen
>>
>> On Mar 18, 2004, at 5:29 AM, Khalil El Mazouari wrote:
>>
>>> Hi
>>> when I try to run any emboss application, I obtained the following  
>>> error:
>>>    error while loading shared libraries: libnucleus.so.0: cannot  
>>> open shared object file: no such file or directory.
>>> but the file is located at /opt/BioBrew/EMBOSS/2.6.0/lib/
>>> Any idea why I get this error?
>>> thank you
>>> Khalil
>>>
>>>
>>> --------------------------------------------------------------------- 
>>> --
>>> THIS E-MAIL MESSAGE IS INTENDED ONLY FOR THE USE OF THE INDIVIDUAL OR
>>> ENTITY TO WHICH IT IS ADDRESSED AND MAY CONTAIN INFORMATION THAT IS
>>> PRIVILEGED, CONFIDENTIAL AND EXEMPT FROM DISCLOSURE.
>>> If the reader of this E-mail message is not the intended recipient,  
>>> you
>>> are hereby notified that any dissemination, distribution or copying  
>>> of
>>> this communication is strictly prohibited.  If you have received this
>>> communication in error, please notify us immediately at
>>> ablynx at ablynx.com. Thank you for your co-operation.
>>> --------------------------------------------------------------------- 
>>> --
>>> _______________________________________________
>>> BioBrew-Users mailing list
>>> BioBrew-Users at bioinformatics.org
>>> https://bioinformatics.org/mailman/listinfo/BioBrew-Users
>>>
>>>
>> Glen Otero, Ph.D.
>> Linux Prophet
>> 619.917.1772
>>
>> _______________________________________________
>> BioBrew-Users mailing list
>> BioBrew-Users at bioinformatics.org
>> https://bioinformatics.org/mailman/listinfo/BioBrew-Users
>>
>>
>
>
> -- 
>
> Khalil El Mazouari, PhD.
> Bioinformatics Manager
> Ablynx N.V.
> Technologiepark 4
> 9052 Zwijnaarde
> Belgium
>
> Tel + 32 (0)9 261 06 40
> Fax + 32 (0)9 261 06 27
>
>
>
> -----------------------------------------------------------------------
> THIS E-MAIL MESSAGE IS INTENDED ONLY FOR THE USE OF THE INDIVIDUAL OR
> ENTITY TO WHICH IT IS ADDRESSED AND MAY CONTAIN INFORMATION THAT IS
> PRIVILEGED, CONFIDENTIAL AND EXEMPT FROM DISCLOSURE.
> If the reader of this E-mail message is not the intended recipient, you
> are hereby notified that any dissemination, distribution or copying of
> this communication is strictly prohibited.  If you have received this
> communication in error, please notify us immediately at
> ablynx at ablynx.com. Thank you for your co-operation.
> -----------------------------------------------------------------------
> _______________________________________________
> BioBrew-Users mailing list
> BioBrew-Users at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/BioBrew-Users
>
>
Glen Otero, Ph.D.
Linux Prophet
619.917.1772




More information about the BioBrew-Users mailing list