Sorry. Only half are ready right now. The rest should be ready in a few days. Sorry again for the delay. Glen On Mar 21, 2004, at 4:59 PM, shalini sharon wrote: > > > Hi Glen, > > Is the rpms ready? And if they r , where can I download them? > > Rgs, Sharon. > > >> From: Glen Otero <gotero at linuxprophet.com> >> Reply-To: BioBrew-Users at bioinformatics.org >> To: BioBrew-Users at bioinformatics.org >> Subject: Re: [BioBrew Users] Trouble running mpiBlast >> Date: Mon, 15 Mar 2004 22:44:18 -0800 >> >> >> On Mar 15, 2004, at 10:34 PM, shalini sharon wrote: >> >>> Hi Glen, >>> >>> >>> >>> Thanks for ur reply. Can u send us an email notifying us when the >>> rpms are done? >> >> Absolutely. >> >>> Are we suppose to download the rpms from www.bioinformatics.org >>> website? >> >> That may be one way. But I may be able to email them to you as well. >>> >>> We faced another error while running EMBOSS. Do u have any ideas >>> what this error means? >>> >>> Error message: >>> ===================================================================== >>> == ========= >>> pwd: /opt/BioBrew/EMBOSS/2.6.0/bin >>> [root at frontend-0 bin]./wossname >>> ./wossname: error while loading shared libraries libnucleus.so.0: >>> cannot open shared object file: No such file or direectory >>> ===================================================================== >>> == ========= >>> >>> The pointer seems to point to /usr/local/lib for the file, but the >>> file are located at /opt/BioBrew/EMBOSS/2.6.0/lib. Is there any >>> where to change the pointer?? And which file contain the pointer >>> code? >> >> Can you make a symbolic link that points to the proper library? >> >> Glen >> >>> >>> >>> Rgds >>> Sharon >>> >>>> From: Glen Otero <gotero at linuxprophet.com> >>>> Reply-To: BioBrew-Users at bioinformatics.org >>>> To: BioBrew-Users at bioinformatics.org >>>> Subject: Re: [BioBrew Users] Trouble running mpiBlast >>>> Date: Mon, 15 Mar 2004 19:50:31 -0800 >>>> >>>> Sharon- >>>> >>>> We should have new rpms by Tuesday or Wednesday (California time) ; >>>> ) >>>> >>>> Glen >>>> >>>> On Mar 15, 2004, at 4:53 PM, shalini sharon wrote: >>>> >>>>> >>>>> Hi, Glen >>>>> >>>>> Can we know by when u will be able to send urs the rpms? >>>>> >>>>> Thank U >>>>> >>>>> Rgs, sharon >>>>> >>>>> >>>>>> From: Glen Otero <gotero at linuxprophet.com> >>>>>> Reply-To: BioBrew-Users at bioinformatics.org >>>>>> To: BioBrew-Users at bioinformatics.org >>>>>> Subject: Re: [BioBrew Users] Trouble running mpiBlast >>>>>> Date: Mon, 15 Mar 2004 12:19:01 -0800 >>>>>> >>>>>> Soumyadeep- >>>>>> >>>>>> No need to switch over to BioBrew 3.0 just yet. We should be able >>>>>> to send you new rpms for BLAST, lam-mpi, and vmi (if necessary) >>>>>> to take care of the problems on 1.0. >>>>>> >>>>>> Glen >>>>>> >>>>>> On Mar 15, 2004, at 9:45 AM, Soumyadeep nandi wrote: >>>>>> >>>>>>> Hi Glen, >>>>>>> >>>>>>>> You're running BioBrew 1.0, correct? >>>>>>> >>>>>>> We are using BioBrew 1.0 and isos are downloaded from >>>>>>> ftp://ftp.bay13.net/pub/BioBrew/. >>>>>>> Moreover, you have released version 3.0, that is >>>>>>> available in "Massachusetts, USA -- >>>>>>> http://bioinformatics.org/ftp/biobrew/", should we >>>>>>> switch over to this latest version. >>>>>>> >>>>>>> Regards, >>>>>>> Soumyadeep >>>>>>> >>>>>>> --- Glen Otero <gotero at linuxprophet.com> wrote: >>>>>>>> Soumyadeep- >>>>>>>> >>>>>>>> You're running BioBrew 1.0, correct? >>>>>>>> >>>>>>>> Glen >>>>>>>> >>>>>>>> On Mar 13, 2004, at 7:40 AM, Soumyadeep nandi wrote: >>>>>>>> >>>>>>>>> --- Glen Otero <gotero at linuxprophet.com> wrote: >>>>>>>>>>> The pvm we were using in production mode was >>>>>>>>>>> HMMER-2.3.2 compiled with the intel compiler. >>>>>>>>>> >>>>>>>>>> What flags did you use to compile HMMER with the >>>>>>>>>> Intel compiler? We'll >>>>>>>>>> be offering the Intel compilers and tools in our >>>>>>>>>> distro soon. >>>>>>>>> >>>>>>>>> We used the precompiled version from the hmmer >>>>>>>> site - >>>>>>>>> here is the listing: >>>>>>>>> >>>>>>>>> Intel GNU/Linux >>>>>>>>> Download: hmmer-2.3.2.bin.intel-linux.tar.gz >>>>>>>>> Or, as an RPM: >>>>>>>> hmmer-2.3.2-1static_pvm.i686.rpm >>>>>>>>> Dell 6450; 4xPIII/700/2; Red Hat Linux 7.2; >>>>>>>>> --enable-threads --enable-lfs --enable-pvm; CC=icc >>>>>>>>> CFLAGS="-O3 -axMKW -static" >>>>>>>>> the RPM spec file is available: hmmer-pvm.spec >>>>>>>>> >>>>>>>>> Soumyadeep >>>>>>>>> >>>>>>>>> __________________________________ >>>>>>>>> Do you Yahoo!? >>>>>>>>> Yahoo! Mail - More reliable, more storage, less >>>>>>>> spam >>>>>>>>> http://mail.yahoo.com >>>>>>>>> _______________________________________________ >>>>>>>>> BioBrew-Users mailing list >>>>>>>>> BioBrew-Users at bioinformatics.org >>>>>>>>> >>>>>>>> >>>>>>> https://bioinformatics.org/mailman/listinfo/BioBrew-Users >>>>>>>>> >>>>>>>>> >>>>>>>> Glen Otero, Ph.D. >>>>>>>> Linux Prophet >>>>>>>> 619.917.1772 >>>>>>>> >>>>>>>> _______________________________________________ >>>>>>>> BioBrew-Users mailing list >>>>>>>> BioBrew-Users at bioinformatics.org >>>>>>>> >>>>>>> https://bioinformatics.org/mailman/listinfo/BioBrew-Users >>>>>>> >>>>>>> >>>>>>> __________________________________ >>>>>>> Do you Yahoo!? >>>>>>> Yahoo! Mail - More reliable, more storage, less spam >>>>>>> http://mail.yahoo.com >>>>>>> _______________________________________________ >>>>>>> BioBrew-Users mailing list >>>>>>> BioBrew-Users at bioinformatics.org >>>>>>> https://bioinformatics.org/mailman/listinfo/BioBrew-Users >>>>>>> >>>>>>> >>>>>> Glen Otero, Ph.D. >>>>>> Linux Prophet >>>>>> 619.917.1772 >>>>>> >>>>>> _______________________________________________ >>>>>> BioBrew-Users mailing list >>>>>> BioBrew-Users at bioinformatics.org >>>>>> https://bioinformatics.org/mailman/listinfo/BioBrew-Users >>>>> >>>>> _________________________________________________________________ >>>>> Keep track of Singapore & Malaysia stock prices. >>>>> http://www.msn.com.sg/money/ >>>>> >>>>> _______________________________________________ >>>>> BioBrew-Users mailing list >>>>> BioBrew-Users at bioinformatics.org >>>>> https://bioinformatics.org/mailman/listinfo/BioBrew-Users >>>>> >>>>> >>>> Glen Otero, Ph.D. >>>> Linux Prophet >>>> 619.917.1772 >>>> >>>> _______________________________________________ >>>> BioBrew-Users mailing list >>>> BioBrew-Users at bioinformatics.org >>>> https://bioinformatics.org/mailman/listinfo/BioBrew-Users >>> >>> _________________________________________________________________ >>> Download games, logos, wallpapers and lots more at MSN Mobile! >>> http://www.msn.com.sg/mobile/ >>> >>> _______________________________________________ >>> BioBrew-Users mailing list >>> BioBrew-Users at bioinformatics.org >>> https://bioinformatics.org/mailman/listinfo/BioBrew-Users >>> >>> >> Glen Otero, Ph.D. >> Linux Prophet >> 619.917.1772 >> >> _______________________________________________ >> BioBrew-Users mailing list >> BioBrew-Users at bioinformatics.org >> https://bioinformatics.org/mailman/listinfo/BioBrew-Users > > _________________________________________________________________ > Get 10mb of inbox space with MSN Hotmail Extra Storage > http://join.msn.com/?pgmarket=en-sg > > _______________________________________________ > BioBrew-Users mailing list > BioBrew-Users at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/BioBrew-Users > > Glen Otero, Ph.D. Linux Prophet 619.917.1772