Humberto- I'll work on this ASAP. I should have this fixed by the end of the week. Glen On Mar 1, 2005, at 8:49 AM, Humberto Ortiz Zuazaga wrote: > There's something still broken with modules on the BioBrew 3.3 roll. > > $ module avail > > --------------------------- /opt/BioBrew/modulefiles > --------------------------- > ClustalW/1.8.3-1 HMMER/2.3.2-pvm gromacs/3.2.1-1 > Fasta/3.4-1 NCBI/6.1.0-2 wise/2.2.0-1 > > $ module add NCBI/6.1.0-2 > > $ module list > Currently Loaded Modulefiles: > 1) NCBI/6.1.0-2 > > $ blast > -bash: blast: command not found > > $ echo $PATH > /opt/BioBrew/NCBI/6.1.0-2/bin:/opt/gridengine/bin/glinux:/opt/BioBrew/ > mrbayes/3 > .0/bin:/usr/kerberos/bin:/opt/FarmTools/fbsng/bin:/usr/local/bin:/bin: > /usr/bin: > /usr/X11R6/bin:/opt/ganglia/bin:/usr/java/j2sdk1.4.2_04/bin:/opt/ > rocks/bin:/opt > /rocks/sbin:/home/humberto/bin > > But the actual location of blast is > > /opt/BioBrew/NCBI/6.1.0/bin/blast > > So the module is incorrectly adding the rpm version number into the > path. > > > _______________________________________________ > BioBrew-Users mailing list > BioBrew-Users at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/BioBrew-Users > > Glen Otero Ph.D. Linux Prophet -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/enriched Size: 1274 bytes Desc: not available Url : http://bioinformatics.org/pipermail/biobrew-users/attachments/20050301/786cc97f/attachment.bin