[BioBrew Users] Re: [Rocks-Discuss]benchmarking Biobrew

[Glen Otero]

The site and docs are great!

Glen

On Mar 28, 2005, at 4:34 PM, Humberto Ortiz Zuazaga wrote:

> Glen Otero <gotero at linuxprophet.com> wrote:
>
>> We should take this discussion off the Rocks list and continue it on
>> the BioBrew list.
>
> Thanks for bringing the discussion here, I'll track down the ROCKS
> thread too.
>
> I've got a couple of notes on our experiences with mpiBLAST on our
> BioBrew 3.3 cluster:
>
> http://plone.hpcf.upr.edu/Members/humberto/Wiki_Folder.2003-07 
> -17.5848/MPIBlastHowto
>
> Bottom line is: if you want to see a speedup don't ever use NFS.
>
> By the way, the problems with SGE and the shell (see comment in script)
> are due to a bug in the mrbayes rpm. More in a separate email.
> _______________________________________________
> BioBrew-Users mailing list
> BioBrew-Users at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/BioBrew-Users
>
>
Glen Otero Ph.D.
Linux Prophet

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