[BioBrew Users] mpiblast and other biobrew apps

[Glen Otero]

Hi Kiran-

The version of the BioBrew roll you have does have a few problems  
that prevent the rpms from installing automatically. So you will have  
to install the rpms yourself. But if you download and install the  
latest roll, 4.1.1, the rpms should install automatically.

Glen

On May 1, 2006, at 7:13 AM, kannaiah at bsd.uchicago.edu wrote:

> Hello,
>
> We installed Biobrew roll on our Rocks cluster. But i dont see any  
> of the
> Biobrew apps having installed on the cluster. I only see their rpms  
> sitting in
> certain folders. I checked on mpiblast and this is what i found  
> (output of FIND
> command)
>
> /home/install/ftp.rocksclusters.org/pub/rocks/rocks-4.1/rocks-dist/ 
> rolls/biobrew/4.1/x86_64/RedHat/RPMS/mpiblast-1.4.0-1.x86_64.rpm
> /home/install/rocks-dist/lan/x86_64/RedHat/RPMS/ 
> mpiblast-1.4.0-1.x86_64.rpm.torrent
> /home/install/rocks-dist/lan/x86_64/RedHat/RPMS/ 
> mpiblast-1.4.0-1.x86_64.rpm
> /share/install/ftp.rocksclusters.org/pub/rocks/rocks-4.1/rocks-dist/ 
> rolls/biobrew/4.1/x86_64/RedHat/RPMS/mpiblast-1.4.0-1.x86_64.rpm
> /share/install/rocks-dist/lan/x86_64/RedHat/RPMS/ 
> mpiblast-1.4.0-1.x86_64.rpm.torrent
> /share/install/rocks-dist/lan/x86_64/RedHat/RPMS/ 
> mpiblast-1.4.0-1.x86_64.rpm
>
> Do i need to manually install these rpms? Or did the Biobrew not  
> install correctly?
>
> I have not run mpiblast before, but shouldnt i be able to type  
> "mpiblast" on the
> command line?
> Likewise Hmmer and other packages of Biobrew.
>
> Thanks for the help
>
> -Kiran
>
>
>
>
>
>
>
>
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