[BioBrew Users] Possible error with 4.1.2 roll

Glen Otero glen at callident.com
Tue May 23 13:04:25 EDT 2006


Oh crap. More rocks issues. I'm at a loss here. I'm sure there's a  
way to make this work, but I don't know it off the top of my head.
You might try reinstalling the new roll now that you've removed  
remains of the old one.

Glen

On May 23, 2006, at 9:42 AM, Jeremy Mann wrote:

> I upgraded the roll from 4.1.1 to 4.1.2 as you said yesterday:
>
> 1) insert the biobrew CD in the frontend node
> 2) cd /home/install
> 3) rocks-dist --install copyroll
> 4) rocks-dist dist
> 5) kroll biobrew > /tmp/install-biobrew.sh
> 6) chmod +x /tmp/install-biobrew.sh
> 7) /tmp/install-biobrew.sh
>
> After doing this, I went to rebuild a node and the installer says it
> can't find byacc-1.9-28. I issued a find command in /home/install and
> that version of byacc is in the old 4.1.1 roll. I then went into
> /home/install/rocks-dist/lan/i386/RedHat/RPMS and the symlink and
> torrent is for byacc-1.9-29.
>
> I was curious if I had to manually remove the 4.1.1 directory and
> issue another rocks-dist dist to update the changes. Now that I've
> already done that, the installer still wants to install the older
> BioBrew roll.
>
> On 5/23/06, Glen Otero <glen at callident.com> wrote:
>> Jeremy-
>>
>> I'm not sure what's going on here. Can you explain what you're doing
>> in more detail? What do you mean by deleting the directory and
>> rebuilding with rocks-dist?
>>
>> Glen
>>
>>
>> On May 23, 2006, at 7:07 AM, Jeremy Mann wrote:
>>
>> > I've upgraded our BioBrew roll from 4.1.1 to 4.1.2 following the
>> > instructions from Glen Otero. When rebuilding an i386 node the
>> > installer errors on byacc. It says it cannot find byacc-1.9.28. The
>> > 4.1.2 roll has byacc-1.9.29. I still have the 4.1.1 roll, should I
>> > delete that directory and rebuild with rocks-dist to fix this?
>> >
>> > --
>> > Jeremy
>> > _______________________________________________
>> > BioBrew-Users mailing list
>> > BioBrew-Users at bioinformatics.org
>> > https://bioinformatics.org/mailman/listinfo/BioBrew-Users
>> >
>> >
>>
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>
>
> -- 
> Jeremy
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>
>




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