[BioBrew Users] Possible error with 4.1.2 roll

[Jeremy Mann]

Me too. All I can do for now is comment out byacc in the three XML
files, biobrew.xml, biobrew-compute.xml and biobrew-frontend.xml. I
hope nothing important needs it.

On 5/23/06, Glen Otero <glen at callident.com> wrote:
> Oh crap. More rocks issues. I'm at a loss here. I'm sure there's a
> way to make this work, but I don't know it off the top of my head.
> You might try reinstalling the new roll now that you've removed
> remains of the old one.
>
> Glen
>
> On May 23, 2006, at 9:42 AM, Jeremy Mann wrote:
>
> > I upgraded the roll from 4.1.1 to 4.1.2 as you said yesterday:
> >
> > 1) insert the biobrew CD in the frontend node
> > 2) cd /home/install
> > 3) rocks-dist --install copyroll
> > 4) rocks-dist dist
> > 5) kroll biobrew > /tmp/install-biobrew.sh
> > 6) chmod +x /tmp/install-biobrew.sh
> > 7) /tmp/install-biobrew.sh
> >
> > After doing this, I went to rebuild a node and the installer says it
> > can't find byacc-1.9-28. I issued a find command in /home/install and
> > that version of byacc is in the old 4.1.1 roll. I then went into
> > /home/install/rocks-dist/lan/i386/RedHat/RPMS and the symlink and
> > torrent is for byacc-1.9-29.
> >
> > I was curious if I had to manually remove the 4.1.1 directory and
> > issue another rocks-dist dist to update the changes. Now that I've
> > already done that, the installer still wants to install the older
> > BioBrew roll.
> >
> > On 5/23/06, Glen Otero <glen at callident.com> wrote:
> >> Jeremy-
> >>
> >> I'm not sure what's going on here. Can you explain what you're doing
> >> in more detail? What do you mean by deleting the directory and
> >> rebuilding with rocks-dist?
> >>
> >> Glen
> >>
> >>
> >> On May 23, 2006, at 7:07 AM, Jeremy Mann wrote:
> >>
> >> > I've upgraded our BioBrew roll from 4.1.1 to 4.1.2 following the
> >> > instructions from Glen Otero. When rebuilding an i386 node the
> >> > installer errors on byacc. It says it cannot find byacc-1.9.28. The
> >> > 4.1.2 roll has byacc-1.9.29. I still have the 4.1.1 roll, should I
> >> > delete that directory and rebuild with rocks-dist to fix this?
> >> >
> >> > --
> >> > Jeremy
> >> > _______________________________________________
> >> > BioBrew-Users mailing list
> >> > BioBrew-Users at bioinformatics.org
> >> > https://bioinformatics.org/mailman/listinfo/BioBrew-Users
> >> >
> >> >
> >>
> >> _______________________________________________
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> >> BioBrew-Users at bioinformatics.org
> >> https://bioinformatics.org/mailman/listinfo/BioBrew-Users
> >>
> >
> >
> > --
> > Jeremy
> > _______________________________________________
> > BioBrew-Users mailing list
> > BioBrew-Users at bioinformatics.org
> > https://bioinformatics.org/mailman/listinfo/BioBrew-Users
> >
> >
>
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-- 
Jeremy