<HTML><BODY style="word-wrap: break-word; -khtml-nbsp-mode: space; -khtml-line-break: after-white-space; ">Jeremy-<DIV><BR class="khtml-block-placeholder"></DIV><DIV>Just in the off chance you don't want to wait, or can't, until this fall for Rocks-4.2, here's the procedure that we discussed this morning for successfully installing the latest BioBrew roll (4.1.2). This was tested by another user (Thanks Doug!) and then sent to me:</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "># insert the biobrew CD into the head node</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">mount /dev/cdrom /mnt/cdrom</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><BR class="khtml-block-placeholder"></DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "># the next two commands set up the correct condition for the compute nodes</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">cd /home/install</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">rocks-dist --install copyroll</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">rocks-dist dist</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: 14px; "><BR></DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "># the next three commands install the software on the head node</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">kroll biobrew > /tmp/install-biobrew.sh</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">chmod +x /tmp/install-biobrew.sh</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">/tmp/install-biobrew.sh</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: 14px; "><BR></DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "># finally, reinstall the compute node(s):</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">ssh-agent shoot-node compute-0-0</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>You'll probably want to register to the BioBrew mailing list. Your email got bounced from there this morning.</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>Glad to hear that there will be a Bio Roll officially supported by the Rocks team.</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>Glen</DIV><DIV><BR><DIV><DIV>On May 16, 2006, at 5:42 PM, Mason J. Katz wrote:</DIV><BR class="Apple-interchange-newline"><BLOCKQUOTE type="cite">We have heard several reports of BioBrew failing to install correctly. You should contact the authors on the BioBrew list for support of this roll. You may also want to wait until later this summer when Rocks 4.2 is released, as it will contain a Bio Roll that is supported and tested by the core Rocks team.<BR><BR><DIV><SPAN class="gmail_quote">On 5/16/06, <B class="gmail_sendername">Jeremy Mann</B> <<A href="mailto:jeremymann@gmail.com">jeremymann@gmail.com</A>> wrote:</SPAN> <BLOCKQUOTE class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Is there a filelist that I can edit so I can remove one RPM from the<BR>BioBrew roll? wwwblast will not install on my nodes. I removed the RPM <BR>from the biobrew roll directory and issued rocks-dist dist. Restarting<BR>the node install it still wants to install wwwblast.<BR><BR>Thanks!<BR><BR>--<BR>Jeremy<BR></BLOCKQUOTE></DIV><BR></BLOCKQUOTE></DIV><BR></DIV></BODY></HTML>