Actually, you may want to do<br><br>rocks-dist --clean --install copyroll<br><br>in step 3.<br><br>You might be better off.<br><br>-Anoop<br><br><div><span class="gmail_quote">On 5/23/06, <b class="gmail_sendername">Glen Otero
</b> <<a href="mailto:glen@callident.com">glen@callident.com</a>> wrote:</span><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Oh crap. More rocks issues. I'm at a loss here. I'm sure there's a
<br>way to make this work, but I don't know it off the top of my head.<br>You might try reinstalling the new roll now that you've removed<br>remains of the old one.<br><br>Glen<br><br>On May 23, 2006, at 9:42 AM, Jeremy Mann wrote:
<br><br>> I upgraded the roll from 4.1.1 to 4.1.2 as you said yesterday:<br>><br>> 1) insert the biobrew CD in the frontend node<br>> 2) cd /home/install<br>> 3) rocks-dist --install copyroll<br>> 4) rocks-dist dist
<br>> 5) kroll biobrew > /tmp/install-biobrew.sh<br>> 6) chmod +x /tmp/install-biobrew.sh<br>> 7) /tmp/install-biobrew.sh<br>><br>> After doing this, I went to rebuild a node and the installer says it<br>
> can't find byacc-1.9-28. I issued a find command in /home/install and<br>> that version of byacc is in the old 4.1.1 roll. I then went into<br>> /home/install/rocks-dist/lan/i386/RedHat/RPMS and the symlink and
<br>> torrent is for byacc-1.9-29.<br>><br>> I was curious if I had to manually remove the 4.1.1 directory and<br>> issue another rocks-dist dist to update the changes. Now that I've<br>> already done that, the installer still wants to install the older
<br>> BioBrew roll.<br>><br>> On 5/23/06, Glen Otero <<a href="mailto:glen@callident.com">glen@callident.com</a>> wrote:<br>>> Jeremy-<br>>><br>>> I'm not sure what's going on here. Can you explain what you're doing
<br>>> in more detail? What do you mean by deleting the directory and<br>>> rebuilding with rocks-dist?<br>>><br>>> Glen<br>>><br>>><br>>> On May 23, 2006, at 7:07 AM, Jeremy Mann wrote:
<br>>><br>>> > I've upgraded our BioBrew roll from 4.1.1 to 4.1.2 following the<br>>> > instructions from Glen Otero. When rebuilding an i386 node the<br>>> > installer errors on byacc. It says it cannot find
byacc-1.9.28. The<br>>> > 4.1.2 roll has byacc-1.9.29. I still have the 4.1.1 roll, should I<br>>> > delete that directory and rebuild with rocks-dist to fix this?<br>>> ><br>>> > --<br>
>> > Jeremy<br>>> > _______________________________________________<br>>> > BioBrew-Users mailing list<br>>> > <a href="mailto:BioBrew-Users@bioinformatics.org">BioBrew-Users@bioinformatics.org
</a><br>>> > <a href="https://bioinformatics.org/mailman/listinfo/BioBrew-Users">https://bioinformatics.org/mailman/listinfo/biobrew-discuss</a><br>>> ><br>>> ><br>>><br>>> _______________________________________________
<br>>> BioBrew-Users mailing list<br>>> <a href="mailto:BioBrew-discuss@bioinformatics.org">BioBrew-Users@bioinformatics.org</a><br>>> <a href="https://bioinformatics.org/mailman/listinfo/biobrew-discuss">
https://bioinformatics.org/mailman/listinfo/BioBrew-Users</a><br>>><br>><br>><br>> --<br>> Jeremy<br>> _______________________________________________<br>> BioBrew-Users mailing list<br>> <a href="mailto:BioBrew-Users@bioinformatics.org">
BioBrew-Users@bioinformatics.org</a><br>> <a href="https://bioinformatics.org/mailman/listinfo/BioBrew-Users">https://bioinformatics.org/mailman/listinfo/BioBrew-Users</a><br>><br>><br><br>_______________________________________________
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</a><br></blockquote></div><br>