[Bioclusters] weird errors from formatdb

[Jeremy Mann]

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After ryncing the BLAST databases from bio-mirror.net, I am now in the
process of formatting. I am encountering stdout errors when formatting
the nr database. Here is snip:

<snip>

formatdb] ERROR: nr.phrOutput
Blast-def-line-set.E.<title>
Invalid value(s) [1] in VisibleString
[AIG1#gi|12324508|gb|AAG52213.1|AC022288_12 AIG1; 4264-2635 [Arabidopsis
thaliana] ...]
[formatdb] ERROR: nr.phrOutput
Blast-def-line-set.E.<title>
Invalid value(s) [1] in VisibleString [CsmE#gi|21648095|gb|AAM73279.1|
chlorosome envelope protein E [Chlorobium tepidum TLS] ...]
[formatdb] ERROR: nr.phrOutput
Blast-def-line-set.E.<title>
Invalid value(s) [1] in VisibleString [DppC#gi|1574113|gb|AAC22839.1|
dipeptide ABC transporter, permease protein (dppC) [Haemophilus
influenzae Rd] ...]
[formatdb] ERROR: nr.phrOutput
Blast-def-line-set.E.<title>
Invalid value(s) [1] in VisibleString [K3R#gi|347484|gb|AAC37869.1| ORF
C2L ...]
[formatdb] ERROR: nr.phrOutput
Blast-def-line-set.E.<title>

</snip>


I am using:

uncompress -c nr.Z | formatdb -i stdin -o T -n nr=20

Should I worry about these errors?

Thanks.


--=20
Jeremy Mann
jeremy@biochem.uthscsa.edu

University of Texas Health Science Center
Bioinformatics Core Facility
Phone: (210) 567-2672

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