[Bioclusters] SGE and parallel Blast

[Ivo Grosse]

Hi Ron,

did you get any answer?


Hi list subscribers,

do you know anyone who could possibly submit dual-processor BLAST jobs 
to a cluster through SGE?


Special holiday greetings from a tropical Long Island,

Ivo


Ron Chen <ron_chen_123@yahoo.com> wrote on Sat, 8 Jun 2002:

> I would believe so. Basically anything that requires
> more than 1 CPU needs a PE.
> 
> But I'll send  an e-mail to the SGE mailing-list to
> ask whether there is an easier way or not.
> 
> (http://gridengine.sunsource.net/project/gridengine/maillist.html)
> 
> -Ron
> 
> 
> --- Ivo Grosse wrote:
> > Perhaps: qsub -pe threads 2 <my_blast_script>?
> > 
> > Or something else instead of threads?