[Bioclusters] Web BLAST

Arshad Khan bioclusters@bioinformatics.org
Wed, 20 Nov 2002 11:20:39 -0000

Hi Jeremy,
I have been running a wwwblast server for more than a year now. Here is what
you need to add in blast.rc.
blastn     dna files
blastp     protein files
blastx     protein files
tblastn    dna files
tblastx    dna files

The rest is quite simple but let us know if you have any more problems?

Arshad Khan
Bacterial Pathogenesis & Genomics Unit
Department of Immunity & Infection
Medical School
University of Birmingham
tel: 0121 414 2859

----- Original Message -----
From: "Jeremy Mann" <jeremy@bioc09.v19.uthscsa.edu>
To: <bioclusters@bioinformatics.org>
Sent: Tuesday, November 19, 2002 7:04 PM
Subject: [Bioclusters] Web BLAST

> I am trying to get the wwwblast databases installed. I have downloaded
> the Preformatted Databases and am having trouble with the blast.rc file.
> I am not a scientist, so I do not know which databases need to be
> searched with blastn, blastp, tblast and so forth. If anybody can send
> me their blast.rc file, I would be greatly appreciated.
> Thank you.
> --
> Jeremy Mann
> jeremy@biochem.uthscsa.edu
> University of Texas Health Science Center
> Bioinformatics Core Facility
> Phone: (210) 567-2672
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