[Bioclusters] Sun GrideEngine Help?

bioinfo bioclusters@bioinformatics.org
Mon, 16 Sep 2002 10:40:23 -0400


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Hello,
	Hello, I hope someone here has some experience with Sun
GridEngine.  I have recently installed GrideEngine v5.3 on a RedHat
Linux 7.3 Cluster. The install wasn't too bad, but here is what I am
having difficulty with. I have followed the install guide and created
the sgeadmin account and installed under this account. I am able to see
all the nodes with appropriate parameters and I can submit the
sleeper.sh job from either the sgeadmin or root account and they queue
and execute correctly. Now here is where I run into several problems: 
1. Other users (not root or sgeadmin) cannot correctly execute jobs. The
appear in the queue and then some, not all of them, turn red and Error
state. Some of the jobs actually make it to a queue (the number of the
queue changes randomly) and execute. 
2. None of the job output is returned to the master node, but rather
remains on the slave node it was executed on. 
3. Here is what I have tried: I read (only one line) in the manual that
the slave nodes need to have the same user name that is on the master. I
created users names on several of the slaves (maintaining the same UID
and GID). This did not correct the problem. I am at a loss as to how to
correct this issue. 
Thanks in advance for any help,
Mark


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<P><FONT FACE=3D"Times New Roman">Hello,</FONT>

<BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <FONT FACE=3D"Times New =
Roman">Hello, I hope someone here has some experience with Sun =
GridEngine.&nbsp; I have recently installed GrideEngine v5.3 on a RedHat =
Linux 7.3 Cluster. The install wasn't too bad, but here is what I am =
having difficulty with. I have followed the install guide and created =
the sgeadmin account and installed under this account. I am able to see =
all the nodes with appropriate parameters and I can submit the =
sleeper.sh job from either the sgeadmin or root account and they queue =
and execute correctly. Now here is where I run into several problems: =
</FONT></P>

<P><FONT FACE=3D"Times New Roman">1. Other users (not root or sgeadmin) =
cannot correctly execute jobs. The appear in the queue and then some, =
not all of them, turn red and Error state. Some of the jobs actually =
make it to a queue (the number of the queue changes randomly) and =
execute. </FONT></P>

<P><FONT FACE=3D"Times New Roman">2. None of the job output is returned =
to the master node, but rather remains on the slave node it was executed =
on. </FONT>

<BR><FONT FACE=3D"Times New Roman">3. Here is what I have tried: I read =
(only one line) in the manual that the slave nodes need to have the same =
user name that is on the master. I created users names on several of the =
slaves (maintaining the same UID and GID). This did not correct the =
problem. I am at a loss as to how to correct this issue. </FONT></P>

<P><FONT FACE=3D"Times New Roman">Thanks in advance for any help,</FONT>

<BR><FONT FACE=3D"Times New Roman">Mark</FONT>
</P>

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