Hello Chris, > Be careful with your benchmarks as they can be meaningless or=20 > misleading. You will find that the speed of blast distributed=20 > within a=20 > cluster or compute farm is directly related to 2 things: (a)=20 > the amount=20 > of physical memory in the compute nodes and (b) the speed of your=20 > storage or disk I/O system. >=20 > You can have the fastest server on earth but if you searching with=20 > blast against an NFS mounted database and your network or=20 > fileserver is=20 > slow then your blast searching speeds will be horrible. Give=20 > me a small=20 > number of speedy linux boxes and I can bring a $300,000=20 > NFS/NAS system=20 > to its knees. Storage does matter. Anyone ever look or try solid state disks? =20 > Blast performance also depends on you tune your DRM=20 > (gridengine or LSF=20 > etc. etc.) and how you adjust your workflow with respect to=20 > splitting=20 > large databases, locally caching data on compute nodes etc. etc. >=20 > What are you trying to benchmark for? Picking the right CPU? Some=20 > people on this list may have already done this. My personal=20 > preference=20 > is Intel Pentium III's right now because: >=20 > o P IV's are way too expensive > o P III's are dirt cheap > o There are a ton of dual-CPU motherboard options for the=20 > PIII allowing=20 > me flexible choices of system packaging and vendor > o Athalon / AMDs are super fast but your motherboard choices are=20 > limited and you need to be really careful about cooling and=20 > ventilation Thank you, Steve Gaudet=20 Linux Solutions Engineer .....=20 <(=A9=BF=A9)>=20 =20 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D | Turbotek Computer Corp. tel:603-666-3062 ext. 21 | | 161 Abby Rd fax:603-666-4519 | | Manchester, NH 03103 e-mail:sgaudet@turbotekcomputer.com | | toll free:800-573-5393 web: http://www.turbotekcomputer.com | =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D =20 =20