[Bioclusters] Opteron Perl64 segfault issues

[Nathan Siemers]

Hello Joe,

My default SUSE opteron configuration may not have the libs to run your 
build:


opt:/u1/gcgblast # formatdb -p F -i test &
formatdb: /lib64/libc.so.6: version `GLIBC_2.3' not found (required by 
formatdb)
[1] 10941
[1]   Exit 1                  formatdb -p F -i test
opt:/u1/gcgblast # ldd /usr/local/bin/formatdb
/usr/local/bin/formatdb: /lib64/libc.so.6: version `GLIBC_2.3' not found 
(required by /usr/local/bin/formatdb)
        libm.so.6 => /lib64/libm.so.6 (0x0000002a9566a000)
        libc.so.6 => /lib64/libc.so.6 (0x0000002a957c2000)
        /lib64/ld-linux-x86-64.so.2 => /lib64/ld-linux-x86-64.so.2 
(0x0000002a95556000)


I assume these are 64 bit executables?  Is there a newer libc needed?

Thanks for your (past and present) help with the opteron platform.

    Nathan



Joseph Landman wrote:

>Hi Doug:
>
>  These are 2.2.6.  The tree's VERSION (ncbi/VERSION) reads:
>
>[landman@squash.scalableinformatics.com:/big/t/ncbi]
>8 >cat VERSION
>Tue Apr 22 10:41:40 EDT 2003
>
>  Please let me know if you have problems with them.   This was a first
>pass at getting working systems.
>
>Joe
>
>On Tue, 2003-08-12 at 20:17, Doug Shubert wrote:
>  
>
>>Hello Joe,
>>What version of ncbitools are you working with ?
>>Doug
>>
>>Joe Landman wrote:
>>
>>    
>>
>>>Its up.  Please let me know if it works.  This is a snapshot from a
>>>build done in June,  Download is
>>>http://scalableinformatics.com/downloads/opteron.ncbitools.tar.gz .  It
>>>is 29MB.
>>>
>>>Joe
>>>
>>>On Tue, 2003-08-12 at 15:46, Joe Landman wrote:
>>>      
>>>
>>>>On Tue, 2003-08-12 at 13:11, Nathan Siemers wrote:
>>>>        
>>>>
>>>>>That's great news, Joe.  Has this build passed any regression tests,
>>>>>i.e. rigorous
>>>>>comparison to output from blastall on other architectures?
>>>>>          
>>>>>
>>>>I have not had an opteron to run on long enough to run my normal tests.
>>>>It did generate the same results for my short tests.
>>>>        
>>>>
>>>--
>>>Joseph Landman, Ph.D
>>>Scalable Informatics LLC,
>>>email: landman@scalableinformatics.com
>>>web  : http://scalableinformatics.com
>>>phone: +1 734 612 4615
>>>
>>>_______________________________________________
>>>Bioclusters maillist  -  Bioclusters@bioinformatics.org
>>>https://bioinformatics.org/mailman/listinfo/bioclusters
>>>      
>>>
>>_______________________________________________
>>Bioclusters maillist  -  Bioclusters@bioinformatics.org
>>https://bioinformatics.org/mailman/listinfo/bioclusters
>>    
>>