[Bioclusters] Information request on benchmarking apps
rao.dronamraju
bioclusters@bioinformatics.org
Mon, 25 Aug 2003 14:34:46 -0700
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Thanks for the info. I was looking for informaton on the following =
applications. If anyone knows a site that has more detailed information =
please send the URL to me.=20
BLAST, FastA, Phrap, HMMER, ClustalW, RepeatMasker, LASSAP,GeneHunter, =
GeneScan, GenomeScan
Regards,
Rao
----- Original Message -----=20
From: Tim Harsch=20
To: bioclusters@bioinformatics.org=20
Sent: Tuesday, August 19, 2003 3:42 PM
Subject: Re: [Bioclusters] Information request on benchmarking apps
I might not be reading this right, but if your looking for something =
to *do* benchmarking then there is one utility out there called "Bonnie" =
that benches your disks. But, its not specific to Life Sciences per se.
----- Original Message -----=20
From: rao.dronamraju=20
To: bioclusters@bioinformatics.org=20
Sent: Tuesday, August 19, 2003 11:16 AM
Subject: [Bioclusters] Information request on benchmarking apps
Folks,
I am new to the field of bioinformatics, could some one point me to =
a website or any place which has infromation on most used benchmark =
applications in Life Sciences area.=20
Thanks
Rao
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<DIV><FONT face=3DArial size=3D2></FONT> </DIV>
<DIV><FONT face=3DArial size=3D2>Thanks for the info. I was looking for =
informaton=20
on the following applications. If anyone knows a site that has =
more=20
detailed information please send the URL to me.</FONT> </DIV>
<DIV><FONT face=3DArial size=3D2></FONT> </DIV>
<DIV><SPAN style=3D"FONT-SIZE: 16pt; COLOR: maroon"><FONT =
color=3D#000000=20
size=3D2>BLAST, FastA, Phrap, </FONT></SPAN><SPAN=20
style=3D"FONT-SIZE: 16pt; COLOR: maroon"><FONT color=3D#000000 =
size=3D2>HMMER,=20
</FONT></SPAN><SPAN style=3D"FONT-SIZE: 16pt; COLOR: maroon"><FONT =
color=3D#000000=20
size=3D2>ClustalW, RepeatMasker, </FONT></SPAN><SPAN=20
style=3D"FONT-SIZE: 16pt; COLOR: maroon"><FONT color=3D#000000=20
size=3D2>LASSAP,GeneHunter, </FONT></SPAN><SPAN=20
style=3D"FONT-SIZE: 16pt; COLOR: maroon"><FONT color=3D#000000 =
size=3D2>GeneScan,=20
GenomeScan</FONT></SPAN></DIV>
<DIV><SPAN style=3D"FONT-SIZE: 16pt; COLOR: maroon"><FONT =
color=3D#000000=20
size=3D2></FONT></SPAN> </DIV>
<DIV><SPAN style=3D"FONT-SIZE: 16pt; COLOR: maroon"><FONT =
color=3D#000000=20
size=3D2>Regards,</FONT></SPAN></DIV>
<DIV><SPAN style=3D"FONT-SIZE: 16pt; COLOR: maroon"><FONT =
color=3D#000000=20
size=3D2>Rao</FONT></SPAN></DIV>
<DIV><SPAN style=3D"FONT-SIZE: 16pt; COLOR: maroon"><FONT =
color=3D#000000=20
size=3D2></FONT></SPAN> </DIV>
<BLOCKQUOTE dir=3Dltr=20
style=3D"PADDING-RIGHT: 0px; PADDING-LEFT: 5px; MARGIN-LEFT: 5px; =
BORDER-LEFT: #000000 2px solid; MARGIN-RIGHT: 0px">
<DIV style=3D"FONT: 10pt arial">----- Original Message ----- </DIV>
<DIV=20
style=3D"BACKGROUND: #e4e4e4; FONT: 10pt arial; font-color: =
black"><B>From:</B>=20
<A title=3Dharsch1@llnl.gov href=3D"mailto:harsch1@llnl.gov">Tim =
Harsch</A> </DIV>
<DIV style=3D"FONT: 10pt arial"><B>To:</B> <A=20
title=3Dbioclusters@bioinformatics.org=20
=
href=3D"mailto:bioclusters@bioinformatics.org">bioclusters@bioinformatics=
.org</A>=20
</DIV>
<DIV style=3D"FONT: 10pt arial"><B>Sent:</B> Tuesday, August 19, 2003 =
3:42=20
PM</DIV>
<DIV style=3D"FONT: 10pt arial"><B>Subject:</B> Re: [Bioclusters] =
Information=20
request on benchmarking apps</DIV>
<DIV><BR></DIV>
<DIV><FONT face=3DArial size=3D2>I might not be reading this right, =
but if your=20
looking for something to *do* benchmarking then there is one utility =
out there=20
called "Bonnie" that benches your disks. But, its not specific =
to Life=20
Sciences per se.</FONT></DIV>
<DIV><FONT face=3DArial size=3D2></FONT> </DIV>
<DIV><FONT face=3DArial size=3D2></FONT> </DIV>
<BLOCKQUOTE dir=3Dltr=20
style=3D"PADDING-RIGHT: 0px; PADDING-LEFT: 5px; MARGIN-LEFT: 5px; =
BORDER-LEFT: #000000 2px solid; MARGIN-RIGHT: 0px">
<DIV style=3D"FONT: 10pt arial">----- Original Message ----- </DIV>
<DIV=20
style=3D"BACKGROUND: #e4e4e4; FONT: 10pt arial; font-color: =
black"><B>From:</B>=20
<A title=3Drao.dronamraju@sbcglobal.net=20
href=3D"mailto:rao.dronamraju@sbcglobal.net">rao.dronamraju</A> =
</DIV>
<DIV style=3D"FONT: 10pt arial"><B>To:</B> <A=20
title=3Dbioclusters@bioinformatics.org=20
=
href=3D"mailto:bioclusters@bioinformatics.org">bioclusters@bioinformatics=
.org</A>=20
</DIV>
<DIV style=3D"FONT: 10pt arial"><B>Sent:</B> Tuesday, August 19, =
2003 11:16=20
AM</DIV>
<DIV style=3D"FONT: 10pt arial"><B>Subject:</B> [Bioclusters] =
Information=20
request on benchmarking apps</DIV>
<DIV><BR></DIV>
<DIV><FONT face=3DArial size=3D2>Folks,</FONT></DIV>
<DIV><FONT face=3DArial size=3D2></FONT> </DIV>
<DIV><FONT face=3DArial size=3D2>I am new to the field of =
bioinformatics, could=20
some one point me to a website or any place which has infromation on =
most=20
used benchmark applications in Life Sciences area. </FONT></DIV>
<DIV><FONT face=3DArial size=3D2></FONT> </DIV>
<DIV><FONT face=3DArial size=3D2>Thanks</FONT></DIV>
<DIV><FONT face=3DArial size=3D2>Rao</FONT></DIV>
<DIV><FONT face=3DArial size=3D2></FONT> </DIV>
<DIV><FONT face=3DArial=20
size=3D2></FONT> </DIV></BLOCKQUOTE></BLOCKQUOTE></BODY></HTML>
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