[Bioclusters] visualization software for Linux

Joseph Landman bioclusters@bioinformatics.org
15 Jul 2003 10:16:34 -0400

For full blown visualization, have a look at

	OpenDX:   http://www.opendx.org
	Khoros:	  http://www.khoral.com/khoros/
	AVS:	  http://www.avs.com/

for basic visualization/plotting have a look at

	Octave		http://www.octave.org	
	MayaVI		http://mayavi.sourceforge.net/

for molecular/genomic visualization have a look at

	Artemis:	http://www.sanger.ac.uk/Software/Artemis/
	VMD:		http://www.ks.uiuc.edu
	Dino3d:		http://cobra.mih.unibas.ch/dino/
	Ghemical:	http://www.uku.fi/~thassine/ghemical/
	PyMood:		http://allometra.com/	
	ViewMol:	http://viewmol.sourceforge.net/
for API's...

	VTK:		http://public.kitware.com/VTK/

and then the symbolic math environments which can usually link to nice
visual packages

	Mathematica	http://www.wolfram.com
	Maxima		http://maxima.sourceforge.net/
	Maple		http://www.maplesoft.com/


On Tue, 2003-07-15 at 09:39, Andrew Shewmaker wrote:
> I don't know if anyone has ever used it for biology datasets,
> but from what I have seen ViSit is very capable.
> http://www.llnl.gov/VisIt/home.html
> Andrew
Joseph Landman, Ph.D
Scalable Informatics LLC
email: landman@scalableinformatics.com
  web: http://scalableinformatics.com
phone: +1 734 612 4615