This is a multi-part message in MIME format. ------=_NextPart_000_0001_01C3246B.62A7F1A0 Content-Type: text/plain; charset="us-ascii" Content-Transfer-Encoding: quoted-printable Hi. I successfully compiled mpiblast in RedHat Linux environment with gcc version 3.2. But, When I perform mpiformatdb with nt sequence (about 8.4 GB), = mpiformatdb print "Error: Unable to open nt" and quit. For more information, I perform strace with full command. =20 .. open("/root/.mpiblastrc", O_RDONLY) =3D -1 ENOENT (No such file or directory) open("/share/mpiblast/etc/mpiblast.conf", O_RDONLY) =3D 3 brk(0) =3D 0x82db000 brk(0x82dd000) =3D 0x82dd000 fstat64(3, {st_mode=3DS_IFREG|0644, st_size=3D48, ...}) =3D 0 mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, = 0) =3D 0x40014000 read(3, "/path/to/shared/storage\n/path/to"..., 8192) =3D 48 read(3, "", 4096) =3D 0 close(3) =3D 0 munmap(0x40014000, 4096) =3D 0 open("nt", O_RDONLY) =3D -1 EFBIG (File too large) write(2, "E", 1E) =3D 1 write(2, "r", 1r) =3D 1 write(2, "r", 1r) =3D 1 write(2, "o", 1o) =3D 1 write(2, "r", 1r) =3D 1 write(2, ":", 1:) =3D 1 .. write(2, "\n", 1 ) =3D 1 _exit(-1) =3D ? =20 I think that is large file problem. How I can perform mpiformatdb with = large file? ------=_NextPart_000_0001_01C3246B.62A7F1A0 Content-Type: text/html; charset="us-ascii" Content-Transfer-Encoding: quoted-printable <html> <head> <META HTTP-EQUIV=3D"Content-Type" CONTENT=3D"text/html; = charset=3Dus-ascii"> <meta name=3DGenerator content=3D"Microsoft Word 10 (filtered)"> <style> <!-- /* Font Definitions */ @font-face {font-family:Batang; panose-1:2 3 6 0 0 1 1 1 1 1;} @font-face {font-family:Gulim; panose-1:2 11 6 0 0 1 1 1 1 1;} @font-face {font-family:Gulim; panose-1:2 11 6 0 0 1 1 1 1 1;} @font-face {font-family:Batang; panose-1:2 3 6 0 0 1 1 1 1 1;} /* Style Definitions */ p.MsoNormal, li.MsoNormal, div.MsoNormal {margin:0cm; margin-bottom:.0001pt; text-align:justify; text-justify:inter-ideograph; text-autospace:none; word-break:break-hangul; font-size:10.0pt; font-family:Batang;} a:link, span.MsoHyperlink {color:blue; text-decoration:underline;} a:visited, span.MsoHyperlinkFollowed {color:purple; text-decoration:underline;} span.EmailStyle17 {font-family:Gulim; color:windowtext;} /* Page Definitions */ @page Section1 {size:595.3pt 841.9pt; margin:99.25pt 3.0cm 3.0cm 3.0cm; layout-grid:18.0pt;} div.Section1 {page:Section1;} --> </style> </head> <body lang=3DKO link=3Dblue vlink=3Dpurple> <div class=3DSection1 style=3D'layout-grid:18.0pt'> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>Hi</span></font><font = face=3DArial><span lang=3DEN-US style=3D'font-family:Arial'>…</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>I successfully compiled = mpiblast in RedHat Linux environment with gcc version 3.2.</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>But, When I perform = mpiformatdb with nt sequence (about 8.4 GB), mpiformatdb print </span></font><font = face=3DArial><span lang=3DEN-US style=3D'font-family:Arial'>“</span></font><font = face=3D굴림><span lang=3DEN-US style=3D'font-family:Gulim'>Error: Unable to open = nt</span></font><font face=3DArial><span lang=3DEN-US = style=3D'font-family:Arial'>”</span></font><font face=3D굴림><span lang=3DEN-US style=3D'font-family:Gulim'> = and quit.</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>For more information, I = perform strace with full command.</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'> </span></font></p> <p class=3DMsoNormal><font size=3D2 face=3DArial><span lang=3DEN-US = style=3D'font-size: 10.0pt;font-family:Arial'>……</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>open("/root/.mpiblastrc= ", O_RDONLY) =3D -1 ENOENT (No such file or = directory)</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>open("/share/mpiblast/e= tc/mpiblast.conf", O_RDONLY) =3D 3</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>brk(0) &nbs= p;  = ; = =3D 0x82db000</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>brk(0x82dd000) &n= bsp; &nb= sp; =3D 0x82dd000</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>fstat64(3, = {st_mode=3DS_IFREG|0644, st_size=3D48, ...}) =3D 0</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) =3D = 0x40014000</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>read(3, "/path/to/shared/storage\n/path/to"..., 8192) =3D = 48</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>read(3, "", 4096) &n= bsp; =3D 0</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>close(3) = &= nbsp; &n= bsp; =3D 0</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>munmap(0x40014000, 4096) &n= bsp; =3D 0</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>open("nt", O_RDONLY) &nbs= p; =3D -1 EFBIG (File too large)</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DPT-BR style=3D'font-size:10.0pt;font-family:Gulim'>write(2, "E", 1E) &nbs= p; =3D 1</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DPT-BR style=3D'font-size:10.0pt;font-family:Gulim'>write(2, "r", 1r) &nbs= p; =3D 1</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DPT-BR style=3D'font-size:10.0pt;font-family:Gulim'>write(2, "r", 1r) = &= nbsp; =3D 1</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DPT-BR style=3D'font-size:10.0pt;font-family:Gulim'>write(2, "o", 1o) &nbs= p; =3D 1</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>write(2, "r", 1r) &nbs= p; =3D 1</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>write(2, ":", 1:) &nbs= p; =3D 1</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3DArial><span lang=3DEN-US = style=3D'font-size: 10.0pt;font-family:Arial'>……</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>write(2, "\n", = 1</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>) &nb= sp; &nbs= p; =3D 1</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>_exit(-1) &= nbsp; &n= bsp; &nb= sp; =3D ?</span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'> </span></font></p> <p class=3DMsoNormal><font size=3D2 face=3D굴림><span = lang=3DEN-US style=3D'font-size:10.0pt;font-family:Gulim'>I think that is large file = problem. How I can perform mpiformatdb with large file?</span></font></p> </div> </body> </html> ------=_NextPart_000_0001_01C3246B.62A7F1A0--