[Bioclusters] MPIBLAST web submission to SGE queue?

Joe Landman bioclusters@bioinformatics.org
Wed, 14 Jan 2004 20:15:44 -0500

Hi Lance:

  I might be able to help here :)  Please send an email offline, and we
can talk.


On Wed, 2004-01-14 at 15:13, Lance Davidow wrote:
> We would like to compare regular NCBI Web Blast on a 22-node Dell 
> 1750 ROCKS cluster with a web-enabled MPIBLAST. The potential utility 
> is that MPIBLAST will have a faster turnaround time for interactive 
> web users under low cluster load.
> The 1.20 version of MPIBLAST comes with the script WWWBlastWrap.pl to 
> modify the NCBI wwwBlast and submit an MPIBLAST request from the web 
> page to an openPBS queue. Our cluster is using Grid Engine as its 
> scheduler. Has anyone modified this script to allow the submission 
> via web page of MPIBLAST jobs to the Parallel Environment of SGE? We 
> are currently using MPIBLAST via command line only, with Joe 
> Landman's sge_mpiblast script.
> Thanks,
> Lance