[Bioclusters] mpiblast on the smallest possible cluster

Joe Landman bioclusters@bioinformatics.org
Wed, 28 Jan 2004 01:27:23 -0500

Hi Fernan

Fernan Aguero wrote:

>All the tests I've performed (from reading the docs) pass.
>However, all the jobs run on the slave. The master just sits
>down quietly waiting for the slave to finish with one
>segment, before feeding the next. I suppose that this

Are you using mpirun with the -nolocal option?  The -nolocal option 
prevents running threads on the starting node.  Also, what does your 
machines file look like?  Are you using a machines file or just "-np 2" ?

Joseph Landman, Ph.D
Scalable Informatics LLC,
email: landman@scalableinformatics.com
web  : http://scalableinformatics.com
phone: +1 734 612 4615