[Bioclusters] re: how to run mpiblast

kenix y bioclusters@bioinformatics.org
Sat, 17 Jul 2004 11:01:33 +0800

>We have to know what directory you keep the input file and the db in on the 
>frontend, but here is the general idea:

I keep them in /mnt/pvfs.
Sorry, I'm not too sure about what should i  add to the -i /path/to/query.

>$MPIRUN -np <number of procs> -machinefile $ /path/to/file/with/nodelist 
>$BLASTPATH/mpiblast --config-file=$MPIBLASTCONFIG -p blastn -i 
>/path/to/query -d /path/to/ecoli.nt -o /path/to/results_file
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