[Bioclusters] SGE/MPI on OS X

Bernard Li bioclusters@bioinformatics.org
Tue, 20 Jul 2004 14:19:50 -0700

Hi Dave:

I have been using the SGE-LAM tight integration for a while now and have
good results with it.  This integration is done by Chris Duncan and he
has recently posted an updated version on the SGE mailing-list.  If you
want, I can forward you the files.

Tight integration does require quite a bit of tweaking, but it is
definitely achievable.



> -----Original Message-----
> From: bioclusters-admin@bioinformatics.org=20
> [mailto:bioclusters-admin@bioinformatics.org] On Behalf Of=20
> David Adelson
> Sent: Tuesday, July 20, 2004 13:36
> To: bioclusters@bioinformatics.org
> Subject: [Bioclusters] SGE/MPI on OS X
> Does anyone on this listserv have any experience integrating=20
> SGE and MPI within an OS X cluster?
> Specifically we have user who wants to run the mpi=20
> parallelized version of tree-puzzle on our OS X cluster that=20
> is currently managed using SGE. =20
>   While I have seen a preliminary integration of LAM-MPI and=20
> SGE on http://gridengine.sunsource.net/project/gridengine/howto/lam/
> SGE_LAM_Integration.html it is not clear how straightforward=20
> this might be in the real world.
> Any firsthand info and experience you want to share would be welcome.
> Cheers,
> Dave Adelson
> Texas A&M University
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