Dan Bolser wrote: > >Basically I would like to know if I am or could be running mpiBLAST >without knowing it, and all these bugs traceback to mpiBLAST, or if >mpiBLAST is reporting (in the web page above) a bug which traces back to >BLAST on multi CPU archetecture. > > It is highly unlikely you are running mpiBLAST without knowing it. What does your command line look like? This looks like it is a translation bug in the lower reaches of the blast code. mpiBLAST hits those code sections, so it sees the bug more often than not. The notes indicate that it is related to using one of the -m options (for output translation). What does the rest of your command line look like? >I get "blastall 2.2.8". > > >Anybody know if this 'bug' is serious? Can I ignore it? > > Hmm. Does it impact the output data you need (actual alignment information), or are you after parameters and computational "side effects" (bit scores, E-values,...) -- Joseph Landman, Ph.D Scalable Informatics LLC, email: landman@scalableinformatics.com web : http://www.scalableinformatics.com phone: +1 734 612 4615