Dan Bolser wrote: >formatdb -i sequences.fa -o T >blastall -d sequences.fa -p blastp -i domain_sequences.fa -m 8 -a4 > results > > ... >I use -m 8 because I don't care about the alignment, but perhaps that >would give clues to the error. > >If you like I can re-run the problem sequences with -m 7 and send along >some results. > > Try omitting the -m # entirely, or use -m 7 . >Cheers, >Dan. > > -- Joseph Landman, Ph.D Scalable Informatics LLC, email: landman@scalableinformatics.com web : http://www.scalableinformatics.com phone: +1 734 612 4615