Nick Brockner wrote: > Hi Tony, > > We are using the Bioteam iNquiry product for our web-based access. So > far, so good. What type of COTS cluster have you built (number of > nodes, OS, hardware)? We are running an 8 node Apple Xserve G5 cluster > with Gig ethernet. Hello, Nick. We've got 2 servers + 32 compute nodes running the openMosix kernel under RedHat 8.0 at present. All are Athlon XP2400+ with 1GB DDR266. The servers share a 1.6TB RAID and the compute nodes PXE boot 'diskless' (they have a 40GB local disk for swap and /var/tmp). We've bought another 32 @ Athlon XP 2600+ with 1GB DDR333 and will add these soon. I'm sure I'm not the only one on this list to encounter difficulties scaling up a COTS cluster because of things like the mains supply and air conditioning! I don't think we will go beyond 64 compute nodes. > I am in the process of implementing mrbayes on our cluster. I have not > gotten into the parallel implementation of mrbayes yet, but may do so in > the near future. If you want to access my nexus files, let me know and > I will send you the access info directly. You may have to tweak the > files a little bit for mrbayes, as I have seen some issues with these > particular nexus files (which were originally made to be used by PAUP). > You may have to add some information about the dimensions before mybayes > will happily read them. Yes, I would like to - I've already run some of Derek Gatherer's Nexus files using an MPI version of MrBayes that Shane Sturruck (shane@bioss.sari.ac.uk) got working for us. It would be interesting to compare yours. Best wishes, Tony. -- Dr. A.J.Travis, | mailto:ajt@rri.sari.ac.uk Rowett Research Institute, | http://www.rri.sari.ac.uk/~ajt Greenburn Road, Bucksburn, | phone:+44 (0)1224 712751 Aberdeen AB21 9SB, Scotland, UK. | fax:+44 (0)1224 716687