[Bioclusters] mpiBlast OS X

[Aaron Darling]

Assuming you are using mpiBLAST 1.2.1, you need to use the October 2003 
release of the NCBI Toolbox from here:
ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/

Each version of mpiBLAST is designed to compile against a specific 
version of the NCBI Toolbox, as mentioned on our download page here:

http://mpiblast.lanl.gov/download.html

Later toolbox releases changed the API to BlastMakeMultQueries and 
BXMLPrintOutput, which is why you are seeing those build errors.

Regards,
-Aaron

Nick Brockner wrote:

> Hi All,
>
> I think I am missing something here, but attempting to compile 
> mpiBlast gets me the following:
>
> blast_hooks.c: In function `getFakeBioseq':
> blast_hooks.c:785: error: too few arguments to function 
> `BlastMakeMultQueries'
> blast_hooks.c: In function `outputResults':
> blast_hooks.c:1334: error: too few arguments to function 
> `BXMLPrintOutput'
> blast_hooks.c:1345: error: too few arguments to function 
> `BXMLPrintOutput'
> blast_hooks.c:1493: error: too few arguments to function 
> `BXMLPrintOutput'
> blast_hooks.c:1498: error: too few arguments to function 
> `BXMLPrintOutput'
> mpicc: No such file or directory
> make[1]: *** [mpiblast-blast_hooks.o] Error 1
> make: *** [all-recursive] Error 1
>
>
> My setup:
> OS X Server 10.3.5
> gcc version 3.3 20030304 (Apple Computer, Inc. build 1495)
> NCBI toolkit installed
> LAM-MPI version 7.0.6
>
>
> Thanks,
>
> -Nick Brockner
>
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