[Bioclusters] Error message from SGE

[Joe Landman]

Hi Russ:

   I think there is a list specific to Bioteam support issues hosted by 
bioteam.



Rex Nelson wrote:
> I think that this is appropriate for the list.  We have a G5 biocluster 
> running the inquiry software and have recently been getting the 
> following error from a btblastall run:
> 
> rm: ./job_tmp.0.2lBmB1: Directory not empty
>  has been submitted
> your job 260 ("J6411.merge") has been submitted
> Warning: no access to tty (Bad file descriptor).
> Thus no job control in this shell.
> Warning: no access to tty (Bad file descriptor).
> Thus no job control in this shell.
> Warning: no access to tty (Bad file descriptor).
> Thus no job control in this shell.
> <Snip>
> Job 3 COMPLETE. on host delbruck
> Fri Apr  8 00:14:35 CDT 2005
> Job 2 COMPLETE. on host node01.cluster.private
> Fri Apr  8 06:06:30 EDT 2005
> Job 1 COMPLETE. on host node01.cluster.private
> Fri Apr  8 06:14:02 EDT 2005
> Warning: no access to tty (Bad file descriptor).
> Thus no job control in this shell.
> 
> Googling suggests that this is a permissions/group issue.  But I am at a 
> loss to understand why it appeared out of the blue.  Has anyone seen this?
> 
> Rex

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Joseph Landman, Ph.D
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