[Bioclusters] error while running mpiblast

[kalyani goli]

 Hi all!
 Iam running mpiblast with the following command.
  mpirun -np 4 ~/bin/mpiblast -p blastp -d pir.fasta -i
 /home/kalyani/hmmer-2.3.2/src/seq1 -o mpiblastoutput.txt

 Iam getting the following error. Can any one of you help me in finding out
the
 error. Iam attaching the .ncbirc file
 Thanks in Advance
 Kalyani

 [blastall] ERROR: seq31: BlastKarlinBlkGappedCalc: PAM30 is a supported
matrix
 [blastall] ERROR: seq31: BlastKarlinBlkGappedCalc: PAM70 is a supported
matrix
 [blastall] ERROR: seq32: BlastKarlinBlkGappedCalc:  èÑ is not a supported
 matrix
 [blastall] ERROR: seq32: BlastKarlinBlkGappedCalc: BLOSUM80 is a supported
 matrix
 [blastall] ERROR: seq32: BlastKarlinBlkGappedCalc: BLOSUM62 is a supported
 matrix
 [blastall] ERROR: seq32: BlastKarlinBlkGappedCalc: BLOSUM50 is a supported
 matrix
 [blastall] ERROR: seq32: BlastKarlinBlkGappedCalc: BLOSUM45 is a supported
 matrix
 [blastall] ERROR: seq32: BlastKarlinBlkGappedCalc: PAM250 is a supported
 matrix
 [blastall] ERROR: seq32: BlastKarlinBlkGappedCalc: BLOSUM62_20 is a
 supported matrix
 [blastall] ERROR: seq32: BlastKarlinBlkGappedCalc: BLOSUM90 is a supported
 matrix
 [blastall] ERROR: seq32: BlastKarlinBlkGappedCalc: PAM30 is a supported
matrix
 [blastall] ERROR: seq32: BlastKarlinBlkGappedCalc: PAM70 is a supported
matrix
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: â
                                                             is not a
supported
 matrix
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM80 is a
 supported matrix
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM62 is a
 supported matrix
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM50 is a
 supported matrix
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM45 is a
 supported matrix
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: PAM250 is a
 supported matrix
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM62_20 is a
 supported matrix
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM90 is a
 supported matrix
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: PAM30 is a
supported
 matrix
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: PAM70 is a
supported
 matrix
 2       0.0277332       Bailing out with signal 11
 MPI: Program /home/kalyani/bin/mpiblast, Rank 2, Process 9189 called
 MPI_Abort(<communicator>, 0)

 MPI: --------stack traceback-------
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: â
                                                             is not a
supported
 matrix
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM80 is a
 supported matrix
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM62 is a
 supported matrix
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM50 is a
 supported matrix
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM45 is a
 supported matrix
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: PAM250 is a
 supported matrix
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM62_20 is a
 supported matrix
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM90 is a
 supported matrix
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: PAM30 is a
supported
 matrix
 [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: PAM70 is a
supported
 matrix
 3       0.0337366       Bailing out with signal 11

########### .nbirc file contains
 [NCBI]
 Data=/home/kalyani/toolkit/ncbi/data

 [BLAST]
 BLASTDB=/home/kalyani/toolkit/ncbi
 BLASTMAT=/home/kalyani/toolkit/ncbi/data

 [mpiBLAST]
 Shared=/home/kalyani/toolkit/ncbi
 Local=/home/kalyani/toolkit/ncbi

-------------------------------------------------------