[Bioclusters] error while running mpiblast

[Joe Landman]

  MPI: --------stack traceback-------
  [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: â
                                                              is not a
supported

Try running your query using normal blastall.  It is possble that there 
was a communication error somewhere, from looking at the error report. 
The other possibility I see is that

[mpiBLAST]
  Shared=/home/kalyani/toolkit/ncbi
  Local=/home/kalyani/toolkit/ncbi

You want to seperate the shared and local directories (assuming that 
/home/kalyani is shared NFS).  You want the local directory to be local 
to the compute node.  It is quite possible/likely that you are 
overwriting some critical aspects of your data since the two are sitting 
  atop each other.  You might consider using /tmp as a local directory, 
though I usually prefer using local disk space outside system /tmp.


kalyani wrote:
>  Hi all!
>  Iam running mpiblast with the following command.
>   mpirun -np 4 ~/bin/mpiblast -p blastp -d pir.fasta -i 
>  /home/kalyani/hmmer-2.3.2/src/seq1 -o mpiblastoutput.txt
>  
>  Iam getting the following error. Can any one of you help me in finding out 
> the 
>  error. Iam attaching the .ncbirc file
>  Thanks in Advance
>  Kalyani

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Joseph Landman, Ph.D
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