[Bioclusters] Bioinformactic Roll for NPACI Rock

[Glen Otero]

Folks-

I'll start working on a new BioBrew roll for Rocks-4.0 when I get  
back from vacation in two weeks. Hopefully, I'll have a new roll by  
mid August.

Mason--At what point in the steps detailed in the Roll developer's  
guide will I need to apply the changes you mentioned to the graph and  
nodes xml files?

Glen

On Jul 7, 2005, at 10:43 AM, mason j. katz wrote:

> There were some Roll API changes from Rocks 3.3.0 to Rocks 4.0.0 so  
> I would expect it not to install.  The BioBrew developers need to  
> spin a new version for Rocks 4.0.0.
>
> The specifics are (this is for Glen):  The graph itself has changed  
> so the entry point may need to be modified for the new graph  
> structure.  Also both the nodes and graph xml files have a line at  
> the top that says @GRAPH_DTD@ or @KICKSTART_DTD@ this entire line  
> needs to be removed for the new XML parser to work.  We had these  
> in as placeholders and never used them, unfortunately the new XML  
> engine breaks with them.  Also Glen, we are thinking more about a  
> bioroll for Rocks we should talk about the future of BioBrew, give  
> me a call sometime.
>
>     -mjk
>
> On Jul 6, 2005, at 07:00 p, Alan Ng wrote:
>
>
>> Has anyone tried inserting the Biobrew-3.3 roll on Rocks 4.0.  
>> Would be a
>> nice stop-gap measure for some bioinformatics clusters we're  
>> running if
>> it works
>>
>> "Leadership & Life-long Learning"
>>
>> Alan Ng
>> Assistant Manager, Systems
>> Linux Certified Professional
>> Open Source Systems Sdn Bhd
>> www.aldrix.net  Tel: 6 03-8656 0139   Fax: 6 03-8656 0132
>>
>> -------------------------------------------
>>
>> "Carpe Diem: Seize the Day!!"
>>
>>
>>
>> Glen Otero wrote:
>>
>>
>>
>>> BioBrew rolls for x86 and x86_64 are available for Rocks-3.3. Rolls
>>> for Rocks-4.0 are not available yet. The rolls contains BLAST,
>>> mpiBLAST, HMMER, EMBOSS, ClustalW, Gromacs, wise, and Phylip
>>> applications, among others. The main website is biobrew.org.
>>>
>>> Glen
>>>
>>> On Jul 1, 2005, at 7:00 AM, Kurata Sung wrote:
>>>
>>>
>>>
>>>> Hello
>>>>
>>>>      I study faculty of Computer Engineer at Kasetsart
>>>> University,Bangkok Thailand.
>>>>      I want information with bioinformatics roll on NPACI rock
>>>> because my project do this.
>>>>         - What have bioinformatics roll on NPACI rock ?(example :
>>>> biobrew(This is only bioinformatics  roll on NPACI rock which I can
>>>> find from Internet))
>>>>
>>>> Thank you very much
>>>>
>>>> _________________________________________________________________
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>>>> _______________________________________________
>>>> Bioclusters maillist  -  Bioclusters at bioinformatics.org
>>>> https://bioinformatics.org/mailman/listinfo/bioclusters
>>>>
>>>>
>>>>
>>>>
>>>
>>> _______________________________________________
>>> Bioclusters maillist  -  Bioclusters at bioinformatics.org
>>> https://bioinformatics.org/mailman/listinfo/bioclusters
>>>
>>>
>>
>>
>> <alan.vcf>
>> _______________________________________________
>> Bioclusters maillist  -  Bioclusters at bioinformatics.org
>> https://bioinformatics.org/mailman/listinfo/bioclusters
>>
>>
>
> _______________________________________________
> Bioclusters maillist  -  Bioclusters at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bioclusters
>
>