[Bioclusters] error while running mpiblast

[kalyani goli]

Iam running this on SGI multiprocessor(numa). So, everything is
visible to all the processors. Thats why i gave the directory where
ncbi is installed ,and gave it same for both shared and local.

On Mon, 28 Feb 2005 08:26:47 -0500, Joe Landman
<landman at scalableinformatics.com> wrote:
>   MPI: --------stack traceback-------
>   [blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: â
>                                                               is not a
> supported
> 
> Try running your query using normal blastall.  It is possble that there
> was a communication error somewhere, from looking at the error report.
> The other possibility I see is that
> 
> [mpiBLAST]
>   Shared=/home/kalyani/toolkit/ncbi
>   Local=/home/kalyani/toolkit/ncbi
> 
> You want to seperate the shared and local directories (assuming that
> /home/kalyani is shared NFS).  You want the local directory to be local
> to the compute node.  It is quite possible/likely that you are
> overwriting some critical aspects of your data since the two are sitting
>   atop each other.  You might consider using /tmp as a local directory,
> though I usually prefer using local disk space outside system /tmp.
> 
> 
> kalyani wrote:
> >  Hi all!
> >  Iam running mpiblast with the following command.
> >   mpirun -np 4 ~/bin/mpiblast -p blastp -d pir.fasta -i
> >  /home/kalyani/hmmer-2.3.2/src/seq1 -o mpiblastoutput.txt
> >
> >  Iam getting the following error. Can any one of you help me in finding out
> > the
> >  error. Iam attaching the .ncbirc file
> >  Thanks in Advance
> >  Kalyani
> 
> --
> Joseph Landman, Ph.D
> Founder and CEO
> Scalable Informatics LLC,
> email: landman at scalableinformatics.com
> web  : http://www.scalableinformatics.com
> phone: +1 734 786 8423
> fax  : +1 734 786 8452
> cell : +1 734 612 4615
> 
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