[Bioclusters] Any one need a job submitting Perl module for LSF

Rayson Ho raysonlogin at yahoo.com
Thu Mar 17 10:46:28 EST 2005


--- Malay <mbasu at mail.nih.gov> wrote:
> Will come back as soon as something fruitful comes up. As you can 
> understand it's easy to write such a module but not easy to actually 
> debug and test it on different schedular platform. 

That's why we need to use APIs like DRMAA. And in fact the Perl
bindings of DRMAA was written for by the author's bio informatics SGE
cluster.

http://search.cpan.org/~tharsch/Schedule-DRMAAc-0.81/

Rayson



> Let's see wheather
> we 
> can actually come up with something. How about starting a new project
> at 
> Bioinformatics.org? What do you guys say? Script for LSF, GridEngine
> and 
> PBS is already there with us. It needs some redesigning a
> refactoring. 
> We'll see what we can do about DRMAA.
> 
> Cheers,
> 
> -Malay
> 
> 
> 
> Andrew D. Fant wrote:
> > In the absence of someone willing to do the rewrite, I certainly
> have 
> > users who would find this module useful.
> > 
> > Andy
> > 
> > Rayson Ho wrote:
> > 
> >> If we can seperate the "intelligent" part and the LSF interface,
> it may
> >> be more useful...
> >>
> >> And rewrite the LSF interface in DRMAA (DRMAA has the Perl
> bindings
> >> already), then we can have it interface with Gridengine, Gridway,
> >> PBSPro, or Condor.
> >>
> >> Rayson
> >>
> >>
> >> --- Malay <mbasu at mail.nih.gov> wrote:
> >>
> >>> Hi All:
> >>>
> >>> Sometimes back I wrote a perl module for submitting jobs to LSF
> que.
> >>> The module is moderately intelligent. In can
> start,modify,que,delete 
> >>> jobs
> >>> in  LSF. It can also blacklist problematic nodes on the fly, and
> and
> >>> kill and restart jobs automatically.
> >>>
> >>> My question is does anyone need this type of module, in that
> case,
> >>> I'll clean up the code and write a documentation for it and make
> it
> >>> public.
> >>>
> >>> -Malay
> > 
> > _______________________________________________
> > Bioclusters maillist  -  Bioclusters at bioinformatics.org
> > https://bioinformatics.org/mailman/listinfo/bioclusters
> 
> _______________________________________________
> Bioclusters maillist  -  Bioclusters at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bioclusters
> 


		
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