[Bioclusters] Fast HMMer and BLASTN code

Joe Landman landman at scalableinformatics.com
Wed Nov 16 11:21:00 EST 2005

Hi folks:

   I want to announce that we appear to have the fastest HMMer and 
BLASTN builds and benchmarks for AMD Opteron architecture machines.  Our 
HMMer benchmarking gives us a 2x advantage over the commonly downloaded 
binaries, and 2.5x on some customer tests.  The blastn binaries give us 
about 22-24% advantage over the code downloadable from NCBI.

   These builds are immediately available from Scalable Informatics and 
our partners.  Please contact us offline for more information.  Some 
benchmark snapshots may be seen at http://www.scalableinformatics.com .


ps: while we are at SC'05, you can see our blog/comments at 
http://scalability.org and our photos at http://photos.scalability.org .

Joseph Landman, Ph.D
Founder and CEO
Scalable Informatics LLC,
email: landman at scalableinformatics.com
web  : http://www.scalableinformatics.com
phone: +1 734 786 8423
fax  : +1 734 786 8452
cell : +1 734 612 4615

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