[Bioclusters] BioBrew roll 4.1

Glen Otero glen at callident.com
Mon Nov 28 03:14:11 EST 2005

Hey Folks-

BioBrew-4.1 rolls for use with Rocks-4.1 (www.rocksclusters.org) on  
x86 and x86_64 architectures are here (finally). The rolls can be  
downloaded at biobrew.org (ftp://ftp.bioinformatics.org/pub/biobrew/).

Application upgrades for 4.1:
upgraded MrBayes to 3.1-1
upgraded hmmer to 2.3.2-4
upgraded wwwblast to 2.2-12
upgraded EMBOSS to 3.0.0-1
upgraded NCBI BLAST to 2.2.12-1 (using Joe Landman's  
NCBI-2.2.12-1static.src.rpm srpm)
upgraded mpiBLAST to 1.40-1 (using Joe Landman's  
mpiblast-1.4.0-1.src.rpm srpm)
upgraded Phylip to 3.65-1

New applications:

There were several packages that I wanted to include, but I was  
delaying the release for much too long. I will try to create  
incremental releases that include new packages. All SRPMS are posted  
on the website (ftp://ftp.bioinformatics.org/pub/biobrew/srpms/4.1/).  
You can subscribe to the BioBrew mailing list here: http:// 
Thanks to Joe Landman of Scalable Informatics, Luc Ducazu of  
BioLinux, Susan Chacko at NIH, and Rudi Chiarito and Bent Terp of the  
BioRPMS project at the BEA core facility at NOVUM (http:// 
apt.bea.ki.se/) for the packages and SRPMS they make available to the  
community, and from which I borrowed liberally. Their efforts helped  
make this release a reality.

Glen Otero
Linux Prophet

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