Hi Farul: Farul Mohd. Ghazali wrote: > advantage of the FPGA accelerator. I've been asked to see if the > accelerators can be used with general purpose apps first and for > custom algorithms when the group needs it. If by general purpose apps you mean Smith Waterman or pairwise sequence alignment, multiple sequence alignment, HMM, SVM, etc, then yes, you can use such units out of the box with such "software", though you would need to chose the accelerator carefully, as bitfiles (the "software") are not generally compatible between various accelerators. If you want to know whether or not you can program them, I would refer you to http://www.openfpga.org . You can see a discussion of all the aspects (positive and negative). If you want to program them in C, then look at vendors like Celoxica, Impulse (http://www.impulsec.com/), Mentor Graphics (http://www.mentor.com/products/c-based_design/index.cfm), and others. C-based design seems to be the rage these days. Take your C program and turn it (the expensive portions) into logic gates. Joe > > TIA again > _______________________________________________ > Bioclusters maillist - Bioclusters at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bioclusters -- Joseph Landman, Ph.D Founder and CEO Scalable Informatics LLC, email: landman at scalableinformatics.com web : http://www.scalableinformatics.com phone: +1 734 786 8423 fax : +1 734 786 8452 cell : +1 734 612 4615