[Bioclusters] Parallel Sequence Alignment tool

[Ognen Duzlevski]

On Fri, 17 Jul 2009, slitster at rcn.com wrote:

> Date: Fri, 17 Jul 2009 10:41:53 -0400 (EDT)
> From: slitster at rcn.com
> Reply-To: HPC in Bioinformatics <bioclusters at bioinformatics.org>
> To: bioclusters at bioinformatics.org
> Subject: [Bioclusters] Parallel Sequence Alignment tool
> 
> Does anyone have recommnedations for a parallel sequence alignment tool
>
> User investigation so far has turned up clustalW-MPI, but it seams to be using an older version of clustalW.

I once wrote a multi-threaded version of clustalw - you can get it here: 
http://naniteworld.com/clustalw_smp-0.99-9.tar.gz

Ognen