[Bioclusters] Parallel Sequence Alignment tool

Mikhail Fursov mike.fursov at gmail.com
Thu Dec 24 01:59:31 EST 2009


The parallel version of MUSCLE algorithm is available in this open-source
package: http://ugene.unipro.ru . You can also run it remotely any PC with
UGENE installed and configured to serve remote requests.

Note, that even not parallel (original) MUSCLE code can do large alignments
a LOT faster than Clustal and will produce comparable in quality results.


On Fri, Jul 17, 2009 at 8:41 PM, <slitster at rcn.com> wrote:

> Does anyone have recommnedations for a parallel sequence alignment tool
> User investigation so far has turned up clustalW-MPI, but it seams to be
> using an older version of clustalW.
> Any imput much appreciated.
> Cheers
> Steve
> _______________________________________________
> Bioclusters maillist  -  Bioclusters at bioinformatics.org
> http://www.bioinformatics.org/mailman/listinfo/bioclusters

Mikhail Fursov

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