From tjrc at sanger.ac.uk  Wed May  6 08:54:11 2009
From: tjrc at sanger.ac.uk (Tim Cutts)
Date: Wed, 6 May 2009 13:54:11 +0100
Subject: [Bioclusters] Iprscan Installation problem
In-Reply-To: <732eaf390904240924xd078da2sc62bc4b754da673c@mail.gmail.com>
References: <732eaf390904240924xd078da2sc62bc4b754da673c@mail.gmail.com>
Message-ID: <C9C19032-9ABB-4ECC-BB6B-A98284D7848B@sanger.ac.uk>


On 24 Apr 2009, at 5:24 pm, hajar sadr wrote:

> Dear All
>
> I have problem when I installing iprscan on our cluster. It is a LSF  
> cluster
> system and I have access to it as a user not an administrator. I  
> already
> copied all required files as well as licenses which software needs to
> work.The problem is that during  running I get following error:
>
> SUBMITTED iprscan-20090415-14523617
> /iprscan/bin/iprscan:
> /iprscan/tmp/20090415/iprscan-20090415-14523617/merged.raw  
> unavailable : No
> such file or directory
> submitJobs: submission failed: failed to execute lsf42 submit:
> /iprscan/tmp/20090415/iprscan-20090415-14523617/chunk_1/ 
> iprscan-20090415-14523617-blastprodom-cnk1.dsub
> exited with status 65280<br>Bad resource requirement syntax. Job not
> submitted.<br><br><br>To help us solve the problem, please copy and  
> paste
> this error<br>and email it to the administrator <a href="mailto:?subject=Error
> in InterProScan job iprscan-20090415-14523617"></a>.<br><br>Sorry  
> about the
> inconvenience and thank you for using InterProScan.<br><br>
>
> I noticed that iproscan made some directory and files such as  
> "chunk_1" and
> "iprscan-20090415-14523617.dcmd" and so on, but I dont know what the  
> problem
> is with making "merged.raw" and then finding it.Can any body help me  
> in this
> regard

Use bjobs -l or bhist -l to find out exactly what resource requirement  
the jobs were requesting, and then take that information to your local  
LSF administrator, who should be able to show you what's wrong with  
it.  There's probably an iprscan configuration file you can then tweak  
to change the resource requirement string to suit your local cluster.

Regards,

Tim


-- 
 The Wellcome Trust Sanger Institute is operated by Genome Research 
 Limited, a charity registered in England with number 1021457 and a 
 company registered in England with number 2742969, whose registered 
 office is 215 Euston Road, London, NW1 2BE. 


From dag at sonsorol.org  Fri May 15 14:03:16 2009
From: dag at sonsorol.org (Chris Dagdigian)
Date: Fri, 15 May 2009 14:03:16 -0400
Subject: [Bioclusters] [potentially off-topic] hiring consultant(s) w/ HPC
	experience
Message-ID: <A9CCA7DE-B0B3-4162-B7B4-BD7CF9D7D39F@sonsorol.org>

Hi folks,

I think job postings from principals are OK for these lists, apologies  
in advance if they are not.
(Posting under my personal address since that is how I'm subscribed to  
these lists. Strictly speaking I'm posting on behalf of my company  
though)

Summery: BioTeam is a small consulting company operating in the really  
fun niche between life science informatics and high performance IT.  
Our HPC related infrastructure and storage workload has spiked quite  
high so it's time to look for one or more new additions to the team.  
We are basically looking for the rare combination of people who have  
knowledge/experience spanning multiple domains while at the same time  
being comfortable & competent with "client-facing" stuff like  
technical writing, training and speaking in front of audiences. We  
have no backoffice support staff and operate as an entirely virtual  
company so we also need people comfortable working independently and  
without a lot of management hand-holding.

Job posting is here: http://bioteam.net/company/careers.html

Regards,
Chris

{corporate hat: chris at bioteam.net}