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<tt>First and foremost as a courtesy to the bioclusters list users, not
all of whom are mpiblast users, please post future support requests to
<a class="moz-txt-link-abbreviated" href="mailto:mpiblast-users@lists.sourceforge.net">mpiblast-users@lists.sourceforge.net</a> first.<br>
<br>
That said, have you tried parsing output from version 1.3.0? output
from 1.3.0 has the footer information which </tt><tt>1.2.1 </tt><tt>output
lacked. As for the missing "Identities:" line, that's something I
haven't seen. Anybody else? If you can send me a query sequence that
reproducibly gives results without the identities line I will take a
stab at fixing it for you.<br>
<br>
-Aaron<br>
</tt><br>
Rakhi Bhat NONLILLY wrote:
<blockquote
cite="midOFCDDCCB83.0BA66138-ON48256F95.0012490B@EliLilly.lilly.com"
type="cite"><br>
<font face="sans-serif" size="2">Hi ,</font>
<br>
<br>
<font face="sans-serif" size="2">I am using the BPlite perl module to
parse my blast reports. It works very well for NCBI output but has
problems with mpiblast.</font>
<br>
<font face="sans-serif" size="2">Primarily because mpiblast reports
don't have a footer. I could fix this problem but now when I run
mpiblast for protein databases ,</font>
<br>
<font face="sans-serif" size="2">the output doesn't contain the
"Identities" line for some query sequences which again causes my BPlite
to fail.</font>
<br>
<font face="sans-serif" size="2">Has anyone else faced this problem ?
My mpiblast version is 1.2.1.</font>
<br>
<br>
<font face="sans-serif" size="2">Thanks,</font>
<br>
<font face="sans-serif" size="2">Rakhi</font>
</blockquote>
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