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Hi All,</font>
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<br><font size=2 face="sans-serif">I originally sumbitted this question to the Bioperl mailing list, but haven't received any replies.</font>
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<br><font size=2 face="sans-serif">I wonder if anyone here can help ?</font>
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<br><font size=2 face="sans-serif">Thanks,</font>
<br><font size=2 face="sans-serif">Andrew</font>
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</font><font size=2 face="Courier New">Hi,</font>
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I'm having some problems getting the bioperl-ext to install under RHEL3<br>
Update 5 for Opteron.<br>
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I guess it's not strictly a Bioperl problem, but I figure someone here will<br>
have tried this before I and can offer some advice.<br>
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The problem seems to be related to the Staden io_lib. Version 1.8.11<br>
wouldn't compile, as the configure fails since it doesn't appear to<br>
undertsand Opterons. I looked around and found Verison 1.9.0 on<br>
Sourceforge and this appears to compile cleanly, however it doesn't look<br>
like it's left any .so files in /usr/local/lib (or anywhere else for that<br>
matter). It leaves the .a files, but no .so files. <br>
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>From reading the staden::read makefile, this (and I'm guesing it's this )<br>
causes the make process to fail and I can't build ext. I've copied the Read, </font>
<br><font size=2 face="Courier New">os and configure header files into /usr/local/include. Apparently failure to</font>
<br><font size=2 face="Courier New">do this is a common problem in the io_lib install process, but in this case,</font>
<br><font size=2 face="Courier New">it's makes no difference.<br>
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Has anyone on the list compiled the staden io_lib on Opteron ? If so,<br>
pointers to appropriate info/versions etc gratefully received.<br>
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Thanks,<br>
Andrew</font><font size=2 face="sans-serif"><br>
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